MR_7_R214, MR_7_R214 (genetic_marker) Malus x domestica

Marker Overview

Name

MR_7_R214

dbSNP ID

SNP Array ID

480K SNP array for apple:	AX-115182136
20K SNP array for apple:	MR_7_R214

Type

SNP

SNP Alleles

T/C

Probe 1

MR_7_R214.probe: TTCTGCCTTCGCAATGATGCTGGTAAAGAAGGAAGCCATAAAGAAGCTTT

5' Flanking Sequence

AAGGGATACATAGAGGATTCYTGTCCRTGGGGAAGAGGTGAAACCCAATTTTCTRGCAGT

3' Flanking Sequence

AAAGCTTCTTTATGGCTTCCTTCTTTACCAGCATCATTGCGAAGGCAGAATTGTCTTTCT

Species

Publication

Contact

Contact

Name

Details

Michela Troggio

First name:	Michela
Last name:	Troggio
Title:	Researcher
Institution:	Research and Innovation Centre, Fondazione Edmund Mach
Address:	Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:	Italy
Email:	ti.hcamf@oiggort.alehcim
Phone:	+39 0461 615111
Fax:	+39 0461 650218

Libraries


Library Name	Type
20K SNP array for apple	SNP_chip
480K SNP array for apple	SNP_chip

Publications


Year	Publication
2014	Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.

Sequence

>MR_7_R214 ID=MR_7_R214; Name=MR_7_R214; organism=Malus x domestica; type=genetic_marker; length=45bp
GCAGT[A/G]AAAGCTTCTTTATGGCTTCCTTCTTTACCAGCATC

Alignments

Feature Name	Type	Location	Analysis
Chr03	chromosome	Chr03:625298..625298+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation