SNP_FB_0764494, SNP_FB_0764494 (genetic_marker) Malus x domestica

Marker Overview
NameSNP_FB_0764494
dbSNP ID.
SNP Array ID
480K SNP array for apple:AX-115198411
20K SNP array for apple:SNP_FB_0764494
TypeSNP
SNP AllelesT/C
Probe 1SNP_FB_0764494.probe: ATAATTATGAAGGAAACATACCATATAGAAAGCACTGATGTCTCCAGTTT
5' Flanking SequenceTAGTCTTGAATGGTGGTCCTATGAGGTGCTCATTTTGCTTTNTGGGCTGTTAGCAAATCN
3' Flanking SequenceAAACTGGAGACATCAGTGCTTTCTATATGGTATGTTTCCTTCATAATTATCTAATGTCTT
SpeciesMalus x domestica
Primer 1SNP_FB_0764494.S8_494_For: TAGTTGCGCCTTGCCTTGTT
Primer 2SNP_FB_0764494.S8_494_Rev: GCTGATTATTTTCTCGGCACTGA
Primer 3SNP_FB_0764494.S8_494_TSP: AACGGAGTAATTCATGAGAAG
Publication[view all]
ContactMichela Troggio
CommentTSP (Temperature Switch PCR) primers
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Libraries
Library NameType
20K SNP array for appleSNP_chip
480K SNP array for appleSNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-consensus-Allard-2016LG8N/A55.31SNP_FB_0764494View
Sequence
>SNP_FB_0764494 ID=SNP_FB_0764494; Name=SNP_FB_0764494; organism=Malus x domestica; type=genetic_marker; length=41bp
A[A/G]AAACTGGAGACATCAGTGCTTTCTATATGGTATGT
Alignments
Feature NameTypeLocationAnalysis
Chr16 chromosome Chr16:7105030..7105030- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr08 chromosome Chr08:27663157..27663157- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation