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Marker Overview
| Name | SNP_FB_0765585 |
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| dbSNP ID | SNP_FB_0765585 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115198436 | | 20K SNP array for apple: | SNP_FB_0765585 | | 50K SNP array for apple: | AX-105187922 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| Probe 1 | SNP_FB_0765585.probe: ATGTGAAATGTTCATGTGTTCGTTAGGGTTCGCTTGAAATCAGCCTAAAC |
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| 5' Flanking Sequence | ATGAAAAACAAAAGCAGGTAAATACATCTTCAAAATGAATTGGGGAAAAAAAAGAAGATA |
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| 3' Flanking Sequence | GTTTAGGCTGATTTCAAGCGAACCCTAACGAACACATGAACATTTCACATGAAACCATTG |
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| Species | Malus x domestica |
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| Primer 1 | SNP_FB_0765585.S8_585_For: TGGGACGAAGTCCTGAGGTT |
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| Primer 2 | SNP_FB_0765585.S8_585_Rev: CGAACTCCCGAGCAGACAGT |
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| Primer 3 | SNP_FB_0765585.S8_585_TSP: CCAAATCAGCCTAAACA |
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| Publication | [view all] |
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| Contact | Michela Troggio
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| Comment | TSP (Temperature Switch PCR) primers |
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Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2016 | Pagliarani G., Dapena E. , Miñarro M. , Denancé C. , Lespinasse Y. , Rat-Morris E. , Troggio M. , Durel C.E. , Tartarini S. Fine mapping of the rosy apple aphid resistance locus Dp-fl on Linkage Group 8 of the apple cultivar ‘Florina’. Tree Genetics & Genomes 2016, 12:56 |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Sequence
>SNP_FB_0765585 ID=SNP_FB_0765585; Name=SNP_FB_0765585; organism=Malus x domestica; type=genetic_marker; length=75bp
ATCTTCAAAATGAATTGGGGAAAAAAAAGAAGATA[C/T]GTTTAGGCTG
ATTTCAAGCGAACCCTAACGAACAC
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