NZmsEB147967, NZmsEB147967 (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	NZmsEB147967
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	(TC)7
Primer 1	NZmsEB147967.F: CTTTCTCTCTCTTCGCTCCAA
Primer 2	NZmsEB147967.R: AGTGCCTTCGGATTCAACAG
Publication	[view all]
Contact	S. Gardiner

Contact

Name

Details

S. Gardiner

First name:	Sue
Last name:	Gardiner
Institution:	HortResearch, New Zealand
Address:	HortResearch Palmerston North Tennent Drive Private Bag 11 030 Palmerston North, New Zealand
Email:	sgardiner@hortresearch.co.nz
Phone:	64-6-356 8080

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2009	Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	16	N/A	48.4	NZmsEB147967	View
2	Apple-GDxJ-F1-2012	LG16.2	N/A	15.7	NZmsEB147967	View
3	Apple-M432-2012	LG16	N/A	51.1	NZmsEB147967	View
4	Pear-Ba-F1-2013	Ba16	N/A	24.9	NZmsEB147967	View
5	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	93.23	NZmsEB147967	View

Alignments

Feature Name	Type	Location	Analysis
Chr16	chromosome	Chr16:15594538..15594715.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation