AU223486SSR, AU223486SSR (genetic_marker) Malus x domestica | GDR

Marker Overview

Marker Overview


Name	AU223486SSR
Genbank ID	N/A
Type	SSR
Species	Malus x domestica
Repeat Motif	GAA-GA
Primer 1	AU223486SSR.F: TGACTCCATGGTTTCAGACG
Primer 2	AU223486SSR.R: AGCAATTCCTCCTCCTCCTC
Publication	[view all]
Contact	Miyuki Kunihisa Andrea Patocchi

Contact

Name

Details

Miyuki Kunihisa

First name:	Miyuki
Last name:	Kunihisa
Institution:	NARO Institute of Fruit Tree Science
Address:	2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:	Japan
Email:	miyuky@affrc.go.jp
Phone:	81-29-838-6437
Keywords:	fruit drop

Andrea Patocchi

First name:	Andrea
Last name:	Patocchi
Title:	researcher
Institution:	Plant Pathology, Institute of Integrative Biology (IBZ)
Address:	ETH Zurich, CH-8092 Zurich, Switzerland
Country:	Switzerland
Email:	andrea.patocchi@agrl.ethz.ch
Keywords:	SSR

Publications


Year	Publication
2014	Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2006	Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-OA-F1-Orin	OR13	N/A	0	AU223486SSR	View

Alignments

Feature Name	Type	Location	Analysis
Chr13	chromosome	Chr13:3769319..3769525.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr13A	chromosome	chr13A:3407095..3407301.	Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation