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Marker Overview
Name | GH17-101 |
Genbank ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | GH17-101 |
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Type | candidate gene marker |
5' Flanking Sequence | ACAATTTCCAAAGACCCTCCGCCCGCCTTCTCAAGAGCGGCATAAACAGC |
3' Flanking Sequence | TCCAAAATGGCATCGAAAAGATTACGATAGCCACGTTGGCCATCTTGTAC |
Species | Prunus avium |
Primer 1 | isGH17-101.Forward: GAGGCACACTTGCAATACTTCTT |
Primer 2 | isGH17-101.Reverse: TAGGTTTCTATGGCCCTTCC |
Publication | [view all] |
Contact | Stijn Vanderzande
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Comment | peach homologue was located on the peach genome sequence and then located into the sweet cherry map using flanking markers |
Publications
Year | Publication |
2015 | Castède S, Campoy JA, Le Dantec L, Quero-García J, Barreneche T, Wenden B, Dirlewanger E. Mapping of Candidate Genes Involved in Bud Dormancy and Flowering Time in Sweet Cherry (Prunus avium). PloS one. 2015; 10(11):e0143250. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>GH17-101 ID=GH17-101; Name=GH17-101; organism=Prunus avium; type=genetic_marker; length=101bp ACAATTTCCAAAGACCCTCCGCCCGCCTTCTCAAGAGCGGCATAAACAGC RTCCAAAATGGCATCGAAAAGATTACGATAGCCACGTTGGCCATCTTGTA C
Alignments
Feature Name | Type | Location | Analysis |
Pp07 |
chromosome |
Pp07:8969524..8969523. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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