PavCOL2, PavCOL2 (genetic_marker) Prunus avium

Marker Overview
NameCOL2
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:COL2
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTTTCTGGTCATGGCAACGGCGACGGGGACACCCAGTCCTCATCCTCGGC
3' Flanking SequenceTGTTCCGCCTGCGTCTCCAGCACTGATTCCTTTGGCGGAACTGCGGCGAC
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Comment'Regina' [C/C] 'Lapins' [C/T] 'Garnet' [C/T]
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G3N/A1.08COL2View
2Sweet Cherry-RL-F1-2015L3N/A0.86COL2View
3Sweet Cherry-RosBREED-3.8K-20203N/A6.84COL2View
4Sweet Cherry-C-F1-6+9K_array3N/A0.64COL2View
5Sweet Cherry-VxC-F1-6+9K_array3N/A0.64COL2View
Sequence
>COL2 ID=COL2; Name=COL2; organism=Prunus avium; type=genetic_marker; length=101bp
TTTTCTGGTCATGGCAACGGCGACGGGGACACCCAGTCCTCATCCTCGGC
YTGTTCCGCCTGCGTCTCCAGCACTGATTCCTTTGGCGGAACTGCGGCGA
C
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:1473284..1473284. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:661525..661525. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)