s1_25201076, s1_25201076 (genetic_marker) Prunus avium

Marker Overview
Names1_25201076
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_25201076
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCTTGGAAGCACTTTCAAGCAGGGACTACAGAGGAACTATACGACTCAAATTTAATGCTGC AGAATTGCAATGACGATGTTAAGGATGGGATACTGAGAGTGGTGCAAATAGGACTTCTAT GCACCCAAGAGAGTCCCTCTTTACGACCCA
3' Flanking SequenceAATGTCAAAGGCACTGCAGATGCTAACAAAGAAGGAGAAGCACCTTCCTGCACCCGCCAA TCCACCTTTTATAGATGAAAAGACCATGGAACTGAATGACACCGGCGACGACCCGGGTTA CCCTCTAAATGCAGATGGTGCTTCTTCAGT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A25201076s1_25201076View
2Sweet Cherry-RosBREED-3.8K-20201N/A68.96s1_25201076View
3Sweet Cherry-VxC-F1-6+9K_array1N/A92.86s1_25201076View
Sequence
>s1_25201076 ID=s1_25201076; Name=s1_25201076; organism=Prunus avium; type=genetic_marker; length=301bp
CTTGGAAGCACTTTCAAGCAGGGACTACAGAGGAACTATACGACTCAAAT
TTAATGCTGCAGAATTGCAATGACGATGTTAAGGATGGGATACTGAGAGT
GGTGCAAATAGGACTTCTATGCACCCAAGAGAGTCCCTCTTTACGACCCA
MAATGTCAAAGGCACTGCAGATGCTAACAAAGAAGGAGAAGCACCTTCCT
GCACCCGCCAATCCACCTTTTATAGATGAAAAGACCATGGAACTGAATGA
CACCGGCGACGACCCGGGTTACCCTCTAAATGCAGATGGTGCTTCTTCAG
T
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:26175676..26175676. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)