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Marker Overview
Name | s1_29994284 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | TTCCTTGACATCTCTCTGTTATTTCTTTCGCCTCCCACTTTCTGCTTCCCCTCACTTTTC
CGACCTTTTGCCACCTTACCACTTTCTAACAACCGCTGTTTCTGCACACTAGCATCCTTC
TCTTTTTCTTTCATCCTGCTGCCTTCACTT |
3' Flanking Sequence | TTGTTTTCGTATCTTGGGATAAGTTGGTTTCTCCTGAGGCATCATGTGATTCAGTTGTGC
TTACAGGAGCACTAGCAGTGGGATCTTCATCCTTTCCTACCTCTGAATATGAGGCCAATC
CTGCAGCAGCTCCACTCCCTGGACTTGTTG |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_29994284 ID=s1_29994284; Name=s1_29994284; organism=Prunus avium; type=genetic_marker; length=301bp TTCCTTGACATCTCTCTGTTATTTCTTTCGCCTCCCACTTTCTGCTTCCC CTCACTTTTCCGACCTTTTGCCACCTTACCACTTTCTAACAACCGCTGTT TCTGCACACTAGCATCCTTCTCTTTTTCTTTCATCCTGCTGCCTTCACTT YTTGTTTTCGTATCTTGGGATAAGTTGGTTTCTCCTGAGGCATCATGTGA TTCAGTTGTGCTTACAGGAGCACTAGCAGTGGGATCTTCATCCTTTCCTA CCTCTGAATATGAGGCCAATCCTGCAGCAGCTCCACTCCCTGGACTTGTT G
Alignments
Feature Name | Type | Location | Analysis |
Pp01 |
chromosome |
Pp01:30968215..30968215. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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