s1_42240643, s1_42240643 (genetic_marker) Prunus avium

Marker Overview
Names1_42240643
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_42240643
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTTTTTCCTTCTGCTCCTGTGTAAACTTGGTCCTGAACCTTTTCTTTGCTAGCTGTGCTGC TGCTGGCCTGCCCACAGCCCCACCACCATCATGCTCCTCCTGTTCATCAGACTCTGAAGG GAGGGCCCCCATCCCCATCCCCATTCCCAT
3' Flanking SequenceCCCATTCCCATTCCCATGTTGTAAGACATTATCATCTGGTGGGGTGCTGCTGCTCTTGAT GAGGGCATTGTATGGTACCCTAAACCCTCTTGGGGGGCTGCTATTAAATTCTTGTGATGG CCAGGGCCTAATAGGAACTTCCTGCTTCCA
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s1_42240643s1_42240643Prunus aviummarker_locus


Sequence
>s1_42240643 ID=s1_42240643|Name=s1_42240643|organism=Prunus avium|type=genetic_marker|length=301bp
TTTTTCCTTCTGCTCCTGTGTAAACTTGGTCCTGAACCTTTTCTTTGCTA
GCTGTGCTGCTGCTGGCCTGCCCACAGCCCCACCACCATCATGCTCCTCC
TGTTCATCAGACTCTGAAGGGAGGGCCCCCATCCCCATCCCCATTCCCAT
RCCCATTCCCATTCCCATGTTGTAAGACATTATCATCTGGTGGGGTGCTG
CTGCTCTTGATGAGGGCATTGTATGGTACCCTAAACCCTCTTGGGGGGCT
GCTATTAAATTCTTGTGATGGCCAGGGCCTAATAGGAACTTCCTGCTTCC
A
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A42240643s1_42240643View
2Sweet Cherry-RosBREED-3.8K-20201N/A141.26s1_42240643View
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:47575362..47575362. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:38688204..38688204. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)