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Marker Overview
Name | s1_42538505 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | GACAAAGGTTCGACAGTGGTGGGAAGAGAAAGATGTTTTCAGGGCTGAATCTTGTGAAAA
GCCTCCTGAACCAGGGGAGAAGTTCTTTGGAAACTTCCCGTTTCCTTACATGAATGGTTT
TTTGCATCTTGGACATGCATTCTCACTCTC |
3' Flanking Sequence | AAGCTAGAGTTTGCTGCAGCTTACCATAGGCTAAGAGGCGCCAATGTGCTTTTGCCTTTT
GGTTTCCACTGCACTGGCATGCCCATCAAAGCATCAGCTGATAAACTTGCAAGAGAGATT
CAAAAGTTTGGTAACCCGCCAGTTTTTACC |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_42538505 ID=s1_42538505; Name=s1_42538505; organism=Prunus avium; type=genetic_marker; length=301bp GACAAAGGTTCGACAGTGGTGGGAAGAGAAAGATGTTTTCAGGGCTGAAT CTTGTGAAAAGCCTCCTGAACCAGGGGAGAAGTTCTTTGGAAACTTCCCG TTTCCTTACATGAATGGTTTTTTGCATCTTGGACATGCATTCTCACTCTC RAAGCTAGAGTTTGCTGCAGCTTACCATAGGCTAAGAGGCGCCAATGTGC TTTTGCCTTTTGGTTTCCACTGCACTGGCATGCCCATCAAAGCATCAGCT GATAAACTTGCAAGAGAGATTCAAAAGTTTGGTAACCCGCCAGTTTTTAC C
Alignments
Feature Name | Type | Location | Analysis |
Pp01 |
chromosome |
Pp01:47277513..47277513. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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