s1_42792098, s1_42792098 (genetic_marker) Prunus avium

Marker Overview
Names1_42792098
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s1_42792098
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTGCCACTTCTGCATATAACAGAGGTCCCCATGAAGTCAAATTAAAGCTTTGCTAT
3' Flanking SequenceTCCAGCT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
s1_42792098s1_42792098Prunus aviummarker_locus


Sequence
>s1_42792098 ID=s1_42792098|Name=s1_42792098|organism=Prunus avium|type=genetic_marker|length=64bp
CTGCCACTTCTGCATATAACAGAGGTCCCCATGAAGTCAAATTAAAGCTT
TGCTATRTCCAGCT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 1N/A42792098s1_42792098View
2Sweet Cherry-RosBREED-3.8K-20201N/A139.64s1_42792098View
3Sweet Cherry-V-F1-6+9K_array1N/A142.26s1_42792098View
4Sweet Cherry-VxC-F1-6+9K_array1N/A172.87s1_42792098View
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:47024084..47024084. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)