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Marker Overview
Name | s2_2231879 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s2_2231879 |
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Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | AATTGTAAAATCTAATTCACTTAACCCCTGTGCCTATAAATAGAGAGTCTTCAAGGAGCA
AAAGCATTCATATAATAGTCATTCATATTCCATCAAATAGTACACAAAGATAGGGAAAGT
TGAGAGTCACAAAGGGAGAGAAGAGAGAAG |
3' Flanking Sequence | CAGCAGCTGGGAGGCTTTGGGGTCTTGGCAGCCATGAGGATGAAGCTTTTCCATCTCTAG
CTTGCTATCCCTATCTTCTTCTCTTTCCTCTGCCTTTTATTTTCTTCTTGTATTTCCTCA
GTTTTATTTTGTTTTAATAATTGCCATGAT |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s2_2231879 ID=s2_2231879; Name=s2_2231879; organism=Prunus avium; type=genetic_marker; length=301bp AATTGTAAAATCTAATTCACTTAACCCCTGTGCCTATAAATAGAGAGTCT TCAAGGAGCAAAAGCATTCATATAATAGTCATTCATATTCCATCAAATAG TACACAAAGATAGGGAAAGTTGAGAGTCACAAAGGGAGAGAAGAGAGAAG RCAGCAGCTGGGAGGCTTTGGGGTCTTGGCAGCCATGAGGATGAAGCTTT TCCATCTCTAGCTTGCTATCCCTATCTTCTTCTCTTTCCTCTGCCTTTTA TTTTCTTCTTGTATTTCCTCAGTTTTATTTTGTTTTAATAATTGCCATGA T
Alignments
Feature Name | Type | Location | Analysis |
Pp03 |
chromosome |
Pp03:15211243..15211243. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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