|
Marker Overview
Name | s3_972706 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s3_972706 |
|
Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | TGATTGAACAGAACGATGGCCGGGCCGGCAATAAAAGAGAACATTTTCAGCAGAAATTAC
TCGCATGAGCCACCAAACATAGTCTTAAATGGAGCCAAGAACGCCTTCTCAAGTAGACCA
CCGACCCCATCTACAGCTTTACTGATGACA |
3' Flanking Sequence | CCCCCATTGCAAGCAATAAAAGTTCAAATTCAAAAGAACGTGTTTATTTCTACCATCAAG
CTGCACAACAATACACAAAATTGAATCCAAAAGTTATTAATTAAAGCAAAATAATACAAA
TTCAACAATAAAAACCCACAAAGTTCACCA |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
|
Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_972706 ID=s3_972706; Name=s3_972706; organism=Prunus avium; type=genetic_marker; length=301bp TGATTGAACAGAACGATGGCCGGGCCGGCAATAAAAGAGAACATTTTCAG CAGAAATTACTCGCATGAGCCACCAAACATAGTCTTAAATGGAGCCAAGA ACGCCTTCTCAAGTAGACCACCGACCCCATCTACAGCTTTACTGATGACA YCCCCCATTGCAAGCAATAAAAGTTCAAATTCAAAAGAACGTGTTTATTT CTACCATCAAGCTGCACAACAATACACAAAATTGAATCCAAAAGTTATTA ATTAAAGCAAAATAATACAAATTCAACAATAAAAACCCACAAAGTTCACC A
|