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Marker Overview
| Name | s3_5730418 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s3_5730418 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | TTATTGTACAGTTTTGGTTTTTTTCTTTTTTTGGGTCAGGTATATTTCAAGCTGCATTTA
ATTGGTTTGTTTTTTTTTTCCATGGGTAAGAATTTGATTGTTGCCTTTTTATTTAGCAGG
TATATTGACTAATGATGAAGCTGCAGCTGC |
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| 3' Flanking Sequence | TCTGAGAATCCATCAGTTCCCAGCAACCTGCCTGTAGATGGTGCCGAATGGGTTGAACTG
TTTGTCAGGGAAATGATGAGTGCCAATAGTGTGGATGATGCTAGGGCCCGTGCTGCAAAA
GTGCTAGAGGTTTTAGAAAAATCCATCAGT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_5730418 ID=s3_5730418; Name=s3_5730418; organism=Prunus avium; type=genetic_marker; length=301bp
TTATTGTACAGTTTTGGTTTTTTTCTTTTTTTGGGTCAGGTATATTTCAA
GCTGCATTTAATTGGTTTGTTTTTTTTTTCCATGGGTAAGAATTTGATTG
TTGCCTTTTTATTTAGCAGGTATATTGACTAATGATGAAGCTGCAGCTGC
YTCTGAGAATCCATCAGTTCCCAGCAACCTGCCTGTAGATGGTGCCGAAT
GGGTTGAACTGTTTGTCAGGGAAATGATGAGTGCCAATAGTGTGGATGAT
GCTAGGGCCCGTGCTGCAAAAGTGCTAGAGGTTTTAGAAAAATCCATCAG
T
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp03 |
chromosome |
Pp03:6590187..6590187. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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