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Marker Overview
Name | s3_14580653 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | GGGAGCCCCGTTTGTGCTGGCGGAGGCTTTGCGAATCTTGCTGACCAGCTCTGCACATTC
TTCCACCCTTGCGTACTGAAACTGCTGCACTCTTTTCACGCTCAGAAGCTCAAGAACAAC
CACTTTTCGAGCTTTTCTCCAGTACTCCCC |
3' Flanking Sequence | TAAGGAGCAAACGCAACGTTATAGCCGTTGAAGAACAATATAGTTGCAGCTGTAGTTTGA
GGCCGGCCAGAGAAACCAATGTCTTGGTTCTTCATCATGTCCTTGGCCAGTTCTGCAGAT
GAAACTACCAGCGTTGGAAGTTTGCCAAAG |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_14580653 ID=s3_14580653; Name=s3_14580653; organism=Prunus avium; type=genetic_marker; length=301bp GGGAGCCCCGTTTGTGCTGGCGGAGGCTTTGCGAATCTTGCTGACCAGCT CTGCACATTCTTCCACCCTTGCGTACTGAAACTGCTGCACTCTTTTCACG CTCAGAAGCTCAAGAACAACCACTTTTCGAGCTTTTCTCCAGTACTCCCC RTAAGGAGCAAACGCAACGTTATAGCCGTTGAAGAACAATATAGTTGCAG CTGTAGTTTGAGGCCGGCCAGAGAAACCAATGTCTTGGTTCTTCATCATG TCCTTGGCCAGTTCTGCAGATGAAACTACCAGCGTTGGAAGTTTGCCAAA G
Alignments
Feature Name | Type | Location | Analysis |
Pp03 |
chromosome |
Pp03:19923751..19923751. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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