s3_20055647, s3_20055647 (genetic_marker) Prunus avium

Marker Overview
Names3_20055647
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s3_20055647
TypeSNP
SNP AllelesA/C
5' Flanking SequenceGAGCAGCTGTGTTAATGGCGTGTTTACAACGTGTTATATTAACGGTGTTTCTCATGGAGC AATGGCGGGCATGGGTTTTCCTTGTGCTCAACCTCATCCTCTTAGCCATTCTCTTCACTC CCATTTCTTCCACCTCAAATTTTGATCAAA
3' Flanking SequenceCCAACAATGCAGCAGCAACAACAGCAATGCAGAAGTGGTCGAGAATATTGAACCGAAAAA TAAGAGAAGGGAATATTACAGGTGCCCGTCATCAGAACAAGCAGTTGAAGAAGTTAAAGA ATGTGATGAAGAAATATGTAAGAAGAGATC
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 3N/A20055647s3_20055647View
Sequence
>s3_20055647 ID=s3_20055647; Name=s3_20055647; organism=Prunus avium; type=genetic_marker; length=301bp
GAGCAGCTGTGTTAATGGCGTGTTTACAACGTGTTATATTAACGGTGTTT
CTCATGGAGCAATGGCGGGCATGGGTTTTCCTTGTGCTCAACCTCATCCT
CTTAGCCATTCTCTTCACTCCCATTTCTTCCACCTCAAATTTTGATCAAA
MCCAACAATGCAGCAGCAACAACAGCAATGCAGAAGTGGTCGAGAATATT
GAACCGAAAAATAAGAGAAGGGAATATTACAGGTGCCCGTCATCAGAACA
AGCAGTTGAAGAAGTTAAAGAATGTGATGAAGAAATATGTAAGAAGAGAT
C
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:25398147..25398147. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:19894489..19894489. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)