s4_2613297, s4_2613297 (genetic_marker) Prunus avium

Marker Overview
Names4_2613297
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s4_2613297
TypeSNP
SNP AllelesA/C
5' Flanking SequenceAATAAATTAAATTGAATTGGGATCAACAAAATTGGGCAATTAAAGAAAATATGGTACTTG ACTGACCTTCAAAATTTTCTCAACCCAAACTTTTTTGTCATTGATTTCATATCCCATGGA TGTGTATTTAGGGTATTTTCTGTATGTGTA
3' Flanking SequenceAGAAGGAAGAGGTGGTAGAATAACATGATTAGCAGCCCACTTGGAACCAACACCACATCA AGGTACTCATGAAGAAAATCCATGGTCTCCTATGGTCTCTTGCTGCTGCTGCTCAAAATG GCAATGGAGTTGCAGGGATTTTATAAAGGA
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 4N/A2613297s4_2613297View
2Sweet Cherry-RosBREED-3.8K-20204N/A7.35s4_2613297View
3Sweet Cherry-V-F1-6+9K_array5N/A1.91s4_2613297View
Sequence
>s4_2613297 ID=s4_2613297; Name=s4_2613297; organism=Prunus avium; type=genetic_marker; length=301bp
AATAAATTAAATTGAATTGGGATCAACAAAATTGGGCAATTAAAGAAAAT
ATGGTACTTGACTGACCTTCAAAATTTTCTCAACCCAAACTTTTTTGTCA
TTGATTTCATATCCCATGGATGTGTATTTAGGGTATTTTCTGTATGTGTA
MAGAAGGAAGAGGTGGTAGAATAACATGATTAGCAGCCCACTTGGAACCA
ACACCACATCAAGGTACTCATGAAGAAAATCCATGGTCTCCTATGGTCTC
TTGCTGCTGCTGCTCAAAATGGCAATGGAGTTGCAGGGATTTTATAAAGG
A
Alignments
Feature NameTypeLocationAnalysis
Pp04 chromosome Pp04:2613403..2613403. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:3182675..3182675. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)