s4_13896593, s4_13896593 (genetic_marker) Prunus avium

Marker Overview
Names4_13896593
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s4_13896593
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTGTTGCTAGAACACAACTTGTGACTAAAGTCAACACAGCTCTCATGGAGACTCAATTTG GATATCAAAAAATTAAAAACAGTGTAATTATAATTTATAATAATATCGACTCAGCTCTCA TGTAAACACGATTAGACTGGTCTTTTATGT
3' Flanking SequenceCTCTTAGTCTTAGTCAACTTGGTATGACTTTAGACATTGGACTGATTGCTGCTACTGTAG TGAAGTCTGTGTATTCAGTTTGCATGGTTTTGTTTGCTGCTTTAATCCCTTTTCCAATGT TTTCATTTGTATATTAGTTTCTTTTCCAAT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 4N/A13896593s4_13896593View
Sequence
>s4_13896593 ID=s4_13896593; Name=s4_13896593; organism=Prunus avium; type=genetic_marker; length=301bp
CTGTTGCTAGAACACAACTTGTGACTAAAGTCAACACAGCTCTCATGGAG
ACTCAATTTGGATATCAAAAAATTAAAAACAGTGTAATTATAATTTATAA
TAATATCGACTCAGCTCTCATGTAAACACGATTAGACTGGTCTTTTATGT
RCTCTTAGTCTTAGTCAACTTGGTATGACTTTAGACATTGGACTGATTGC
TGCTACTGTAGTGAAGTCTGTGTATTCAGTTTGCATGGTTTTGTTTGCTG
CTTTAATCCCTTTTCCAATGTTTTCATTTGTATATTAGTTTCTTTTCCAA
T
Alignments
Feature NameTypeLocationAnalysis
Pp04 chromosome Pp04:13907200..13907200. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr4 chromosome PAV_r1.0chr4:10564251..10564251. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)