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Marker Overview
| Name | s4_23719778 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s4_23719778 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | AGTGAATACATGATATCTTCTGTAAACTGTTTCTTGCAGTCGAAAGGAAATACAAAGCCA
GTTGTAACAATTTGTAATAGAACTCAGAAATCTTATCAACAAAACAACCATTCTGTGCAG
CACCCACAAGCAGTTAATCCAAACACAAAT |
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| 3' Flanking Sequence | AAATTTTAGTAGGACACTTATTAAAATAAACTAGATGTGTTGGACATAAAATCTAATCGT
AGAGAGTAAGCTTTAGAAGAATCTGAAGGAACAAAATTTGAATCACCAAGCATGCTGCAT
ACCTTAACTGAAGCACTACGAACAACCTCC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s4_23719778 ID=s4_23719778; Name=s4_23719778; organism=Prunus avium; type=genetic_marker; length=301bp
AGTGAATACATGATATCTTCTGTAAACTGTTTCTTGCAGTCGAAAGGAAA
TACAAAGCCAGTTGTAACAATTTGTAATAGAACTCAGAAATCTTATCAAC
AAAACAACCATTCTGTGCAGCACCCACAAGCAGTTAATCCAAACACAAAT
RAAATTTTAGTAGGACACTTATTAAAATAAACTAGATGTGTTGGACATAA
AATCTAATCGTAGAGAGTAAGCTTTAGAAGAATCTGAAGGAACAAAATTT
GAATCACCAAGCATGCTGCATACCTTAACTGAAGCACTACGAACAACCTC
C
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp04 |
chromosome |
Pp04:20117119..20117119. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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