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Marker Overview
| Name | s5_5450020 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s5_5450020 |
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| Type | SNP |
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| SNP Alleles | A/C |
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| 5' Flanking Sequence | TATTTTTGCACGGTAGCAGCTTCAAAAGGAGTTGAACTTGAACAAAAAAGATTAACCTCT
TCTTCAAGATTCCATTGCACGGTGGCTAGGGATTTTGCAAGGTCAGCATTTGCAGCCTCC
AGTTTAGCCAAACGTACAAAGACTTCCATT |
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| 3' Flanking Sequence | TAGTATTATCATGTTTCTGCTTCTCTAAAAAATAAGCAGCTTCCATGGTTTCCATAATGG
TATAATTCAACAATTCCTCCTTTTGTACCAGAAATAGTAATCAATATTTCTGCATATGAA
TTTTTTGAAAGGATCTCCAACTGGAATCCT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_5450020 ID=s5_5450020; Name=s5_5450020; organism=Prunus avium; type=genetic_marker; length=301bp
TATTTTTGCACGGTAGCAGCTTCAAAAGGAGTTGAACTTGAACAAAAAAG
ATTAACCTCTTCTTCAAGATTCCATTGCACGGTGGCTAGGGATTTTGCAA
GGTCAGCATTTGCAGCCTCCAGTTTAGCCAAACGTACAAAGACTTCCATT
MTAGTATTATCATGTTTCTGCTTCTCTAAAAAATAAGCAGCTTCCATGGT
TTCCATAATGGTATAATTCAACAATTCCTCCTTTTGTACCAGAAATAGTA
ATCAATATTTCTGCATATGAATTTTTTGAAAGGATCTCCAACTGGAATCC
T
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp05 |
chromosome |
Pp05:5451061..5451061. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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