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Marker Overview
| Name | s5_9463166 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | AAGGCTTTATATATATATATATATATATATATATATATATCAATGGTCCTCGTGGAGATG
TGAGCTATCAGATTTTCATGATGATTATACTTCTTTCTTGATAATTTTTTTCCATGTTCC
ATATATCTGAAACTTGCACCATTTTGCAGC |
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| 3' Flanking Sequence | TACTCCAAGCATGGCTATCTATGATACTATGCAGAGCTTATAGAGTTCCGTTGGCACCCA
TTGTGTGGGCTATGCCTTTAATTTAGCAGCCTTTCTTCTTGCAGCTGGAGAAAAGTTAAT
AGTACTGAATCCAAGTTGATAAAATCCTTA |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_9463166 ID=s5_9463166; Name=s5_9463166; organism=Prunus avium; type=genetic_marker; length=301bp
AAGGCTTTATATATATATATATATATATATATATATATATCAATGGTCCT
CGTGGAGATGTGAGCTATCAGATTTTCATGATGATTATACTTCTTTCTTG
ATAATTTTTTTCCATGTTCCATATATCTGAAACTTGCACCATTTTGCAGC
KTACTCCAAGCATGGCTATCTATGATACTATGCAGAGCTTATAGAGTTCC
GTTGGCACCCATTGTGTGGGCTATGCCTTTAATTTAGCAGCCTTTCTTCT
TGCAGCTGGAGAAAAGTTAATAGTACTGAATCCAAGTTGATAAAATCCTT
A
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp05 |
chromosome |
Pp05:9464017..9464017. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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