|
|
Marker Overview
| Name | s5_11803889 |
|---|
| dbSNP ID | N/A |
|---|
| SNP Array ID | | Cherry 6+9K SNP array: | s5_11803889 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | A/G |
|---|
| 5' Flanking Sequence | TTCGGAGATGTCAAATGAAATTCAGCAGGCACAGAACATGATACAAGAGCTCACGGTTGA
ATCTAGTCAACTAAAGGAGAAATTGGGTCAGAAAGAAAACGAATATTCAACTCTGTCTGA
GAGGCATGAGCTGCATGAGAACAAAACCTC |
|---|
| 3' Flanking Sequence | GCTCAAATAAAGGGATTACAGGCTACAGTGACAGGGCTGGAACTGGAACTAGAATCGTTG
CAAGGTCAGAAAAGAGACATGGAAGTGAAGATTGAGAGTAAAGAAACTGAAGTTAAACAA
CTGGAAGATGAAAACACAGGACTACAAGTC |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
|---|
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_11803889 ID=s5_11803889; Name=s5_11803889; organism=Prunus avium; type=genetic_marker; length=301bp
TTCGGAGATGTCAAATGAAATTCAGCAGGCACAGAACATGATACAAGAGC
TCACGGTTGAATCTAGTCAACTAAAGGAGAAATTGGGTCAGAAAGAAAAC
GAATATTCAACTCTGTCTGAGAGGCATGAGCTGCATGAGAACAAAACCTC
RGCTCAAATAAAGGGATTACAGGCTACAGTGACAGGGCTGGAACTGGAAC
TAGAATCGTTGCAAGGTCAGAAAAGAGACATGGAAGTGAAGATTGAGAGT
AAAGAAACTGAAGTTAAACAACTGGAAGATGAAAACACAGGACTACAAGT
C
|
