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Marker Overview
| Name | s5_15790379 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s5_15790379 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | AACACTCAAAGTTGTGGCTATAAAATGCAAAATCACAAACATAGAATTATAGCAGTCCTT
TCTTTTATAGAGAAAATTCAGAAAATGCATGTACTCTGTGAGTGCCAGCATCATCATTCT
CAAAGTATTCGGCTATTGGTTAGGACCTAT |
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| 3' Flanking Sequence | TTTATACAATAGAGATGATGCTAGCTCAATGATTGGTTTTTCAGCTGCATTTCTTCAGCT
CAACAACAAAAACTTTCGACTAAAACAAACGAAAATATATAATTCTAACCAACCAACTTT
GAGAATCTATAAAGGAAGAGGATGCCCACC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s5_15790379 ID=s5_15790379; Name=s5_15790379; organism=Prunus avium; type=genetic_marker; length=301bp
AACACTCAAAGTTGTGGCTATAAAATGCAAAATCACAAACATAGAATTAT
AGCAGTCCTTTCTTTTATAGAGAAAATTCAGAAAATGCATGTACTCTGTG
AGTGCCAGCATCATCATTCTCAAAGTATTCGGCTATTGGTTAGGACCTAT
KTTTATACAATAGAGATGATGCTAGCTCAATGATTGGTTTTTCAGCTGCA
TTTCTTCAGCTCAACAACAAAAACTTTCGACTAAAACAAACGAAAATATA
TAATTCTAACCAACCAACTTTGAGAATCTATAAAGGAAGAGGATGCCCAC
C
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