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Marker Overview
| Name | s6_865292 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s6_865292 |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | GAGGAGAACTAGAATTAGCATTGCAGTTGGCTGATGAAGTGTCACTAAACGCTTGAATAT
TGCCGCTACAAATGCTAGAGCTAGAACTAATTCTAGTAGTTGTAGCAGCTATAGGGGTGG
ATTTTAAGCTGCTGTTGGGGGTTGGTGGAG |
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| 3' Flanking Sequence | GCTTTGTTTTTGCTTCAAATTCAAACTTTTCTTGTGGTTGAGGAGGTTTCTGATTTTCAA
AGAGAGTGGAGAATTGGAAGGGACGTGAGTGGAGAAGTTGGTTCGGGTGTTGGAGCCACG
AAGAAGATAAGCAGCTTCATCATAAGCTCG |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_865292 ID=s6_865292; Name=s6_865292; organism=Prunus avium; type=genetic_marker; length=301bp
GAGGAGAACTAGAATTAGCATTGCAGTTGGCTGATGAAGTGTCACTAAAC
GCTTGAATATTGCCGCTACAAATGCTAGAGCTAGAACTAATTCTAGTAGT
TGTAGCAGCTATAGGGGTGGATTTTAAGCTGCTGTTGGGGGTTGGTGGAG
YGCTTTGTTTTTGCTTCAAATTCAAACTTTTCTTGTGGTTGAGGAGGTTT
CTGATTTTCAAAGAGAGTGGAGAATTGGAAGGGACGTGAGTGGAGAAGTT
GGTTCGGGTGTTGGAGCCACGAAGAAGATAAGCAGCTTCATCATAAGCTC
G
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