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Marker Overview
Name | s6_1669474 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s6_1669474 |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AGCTCAAAGTGATGGAAAAATGAGAACACTGACGCCGACATAGGCCAAAGCGCAGCCACC
GGAATATTCCTCCTGTTCCCGACCCTCACAGCCCAAACAACGTACGGATCAGCAACTATG
GCGCTCACCGGCGGCTCGAGCCGGTCCACA |
3' Flanking Sequence | GCTGCTCAAACGGAGCTTCCAACTTGGTGCTCACGGCTTCCACGAAGCCAGGAAAGTCTT
TTGCTCGGACGAGCTCGGAGGGGATGGCGTTTGGTAGCGTGGCGAATCGGATGTTGTCAG
GTTTTGGGTCGGATCCGATGAAGCCGTGCC |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_1669474 ID=s6_1669474; Name=s6_1669474; organism=Prunus avium; type=genetic_marker; length=301bp AGCTCAAAGTGATGGAAAAATGAGAACACTGACGCCGACATAGGCCAAAG CGCAGCCACCGGAATATTCCTCCTGTTCCCGACCCTCACAGCCCAAACAA CGTACGGATCAGCAACTATGGCGCTCACCGGCGGCTCGAGCCGGTCCACA YGCTGCTCAAACGGAGCTTCCAACTTGGTGCTCACGGCTTCCACGAAGCC AGGAAAGTCTTTTGCTCGGACGAGCTCGGAGGGGATGGCGTTTGGTAGCG TGGCGAATCGGATGTTGTCAGGTTTTGGGTCGGATCCGATGAAGCCGTGC C
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