s6_4663888, s6_4663888 (genetic_marker) Prunus avium

Marker Overview
Names6_4663888
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s6_4663888
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTATTTCAAGGGGCCACTGATCCCAGCATAATTCTTAATGTTAACCATTGATTAGGCGAAT TTTTGTTTGAATGGGCGGTCTAGAAAGGCAGTTTGGATAGCACAATCTCCCCTAACTTAT TCATTGTTCAATATAAATTTCAATTCAGAA
3' Flanking SequenceCCCATCAATCTTCTAAGCAATAGCATGGATGCTGCAAAAATAATTATAAGCAGAATAGGG GGGAAAAGCAGAGGGAGAGAATCTAAACCTTGCATATTGAAGGTTCCAGTAAAAATACTT GCAGATCTTCTCAAGAATGGTGGTGCTGAT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 6N/A4663888s6_4663888View
Sequence
>s6_4663888 ID=s6_4663888; Name=s6_4663888; organism=Prunus avium; type=genetic_marker; length=301bp
TATTTCAAGGGGCCACTGATCCCAGCATAATTCTTAATGTTAACCATTGA
TTAGGCGAATTTTTGTTTGAATGGGCGGTCTAGAAAGGCAGTTTGGATAG
CACAATCTCCCCTAACTTATTCATTGTTCAATATAAATTTCAATTCAGAA
RCCCATCAATCTTCTAAGCAATAGCATGGATGCTGCAAAAATAATTATAA
GCAGAATAGGGGGGAAAAGCAGAGGGAGAGAATCTAAACCTTGCATATTG
AAGGTTCCAGTAAAAATACTTGCAGATCTTCTCAAGAATGGTGGTGCTGA
T
Alignments
Feature NameTypeLocationAnalysis
Pp06 chromosome Pp06:4677936..4677936. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr6 chromosome PAV_r1.0chr6:4359085..4359085. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)