s6_17297917, s6_17297917 (genetic_marker) Prunus avium

Marker Overview
Names6_17297917
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:s6_17297917
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGTTGTATTGTCTGCAGACCCTTCTTTGTTTCCAAATGATTACGAAGCTGTGGCACTTTT CGATAGTAATGGAACCAGAGTGGCTCATATTAAGTCAGGGGATCATGGTTGGACTCACAT AGATCAAACAATCAGATTCTTTTATGGTCT
3' Flanking SequenceAATCAAGTGATCGGATTCGATGATGTGATCTATTACAGAGGCCAGTTTCTTGCTGCTAGT AGGGAGGGTGGGGTTTTTGCAATAAACGTTAGCAAGGATCCAACTTATAAACCTCATGTA AGCTTAGTTGTACCAATCGTTCAAGGTATT
SpeciesPrunus avium
Publication[view all]
ContactPatricio Hinrichsen
Stijn Vanderzande
Commentsweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs
Contact
NameDetails
Patricio Hinrichsen
First name:Patricio
Last name:Hinrichsen
Title:Investigator, R&D SubDirector
Institution:Instituto de Investigaciones Agropecuarias (INIA) La Platina
Address:Santa Rosa 11610, La Pintana
Country:Chile
Email:phinrichsen@inia.cl
Phone:56 2 25779101
Fax:56 2 25779104
Keywords:Plant genetics and breeding
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet_cherry_RaxRi_F1-physical-Prunus-persicaV1.0scaffold 6N/A17297917s6_17297917View
2Sweet Cherry-RosBREED-3.8K-20206N/A57.71s6_17297917View
3Sweet Cherry-C-F1-6+9K_array6N/A70.05s6_17297917View
4Sweet Cherry-VxC-F1-6+9K_array6N/A60.72s6_17297917View
Sequence
>s6_17297917 ID=s6_17297917; Name=s6_17297917; organism=Prunus avium; type=genetic_marker; length=301bp
GGTTGTATTGTCTGCAGACCCTTCTTTGTTTCCAAATGATTACGAAGCTG
TGGCACTTTTCGATAGTAATGGAACCAGAGTGGCTCATATTAAGTCAGGG
GATCATGGTTGGACTCACATAGATCAAACAATCAGATTCTTTTATGGTCT
RAATCAAGTGATCGGATTCGATGATGTGATCTATTACAGAGGCCAGTTTC
TTGCTGCTAGTAGGGAGGGTGGGGTTTTTGCAATAAACGTTAGCAAGGAT
CCAACTTATAAACCTCATGTAAGCTTAGTTGTACCAATCGTTCAAGGTAT
T
Alignments
Feature NameTypeLocationAnalysis
Pp06 chromosome Pp06:19163950..19163950. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)