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Marker Overview
| Name | s6_26031628 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/C |
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| 5' Flanking Sequence | GTAGTGAGAGACAACCTGCTCTCTGACATCATCACTGCCAGAGCTAAGAAGCTGCACAAA
CATGGGGACCGCACCATGTTCAATAGCAACTCGTGTATGATCTGATGTTCCAGATGCAAC
ATTGGTCAAAGCCCATGCAGCTTCAAACTG |
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| 3' Flanking Sequence | ATATAAAGATGAAAGTCAACCTCGGTGTTTGATTACACCTTAAAGGATAATTTCATTTTA
ACAACAAACTTCAAAAATATTCCGTACTTGCAATTGGGGCATATCATGTCTCCCAAGAAA
CTCCACAAACCGAGGGACCGCACCTGCTTT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s6_26031628 ID=s6_26031628; Name=s6_26031628; organism=Prunus avium; type=genetic_marker; length=301bp
GTAGTGAGAGACAACCTGCTCTCTGACATCATCACTGCCAGAGCTAAGAA
GCTGCACAAACATGGGGACCGCACCATGTTCAATAGCAACTCGTGTATGA
TCTGATGTTCCAGATGCAACATTGGTCAAAGCCCATGCAGCTTCAAACTG
MATATAAAGATGAAAGTCAACCTCGGTGTTTGATTACACCTTAAAGGATA
ATTTCATTTTAACAACAAACTTCAAAAATATTCCGTACTTGCAATTGGGG
CATATCATGTCTCCCAAGAAACTCCACAAACCGAGGGACCGCACCTGCTT
T
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp06 |
chromosome |
Pp06:27896225..27896225. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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