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Marker Overview
| Name | s7_5248586 |
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| dbSNP ID | N/A |
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| SNP Array ID | | Cherry 6+9K SNP array: | s7_5248586 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| 5' Flanking Sequence | CTGAATCAAAACTGACCGCCGGCGCCGTGTGGGGCAACTCTAATGGAAGCACGATGAGCA
GTTTAGTCTTACGCCACAGCAGGCATGTCCTTGAGCCATGCATCCAGGGGCTTACCAATT
GAGAAGACAATGAAGCCAATCTCACGCAGC |
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| 3' Flanking Sequence | TGTCTGCATCAATAACATATCTACCATCAAATATGAATGCCGGTTTCTGCATGTTCTCAT
AAATCTTGTTGTAATCAAGGCTTTTGAACTCATCCCACTCAGTCAGAATGCAAATCCCAT
GGGCGCCCTTCGTCGCCTCGTACGCGTCCC |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s7_5248586 ID=s7_5248586; Name=s7_5248586; organism=Prunus avium; type=genetic_marker; length=301bp
CTGAATCAAAACTGACCGCCGGCGCCGTGTGGGGCAACTCTAATGGAAGC
ACGATGAGCAGTTTAGTCTTACGCCACAGCAGGCATGTCCTTGAGCCATG
CATCCAGGGGCTTACCAATTGAGAAGACAATGAAGCCAATCTCACGCAGC
KTGTCTGCATCAATAACATATCTACCATCAAATATGAATGCCGGTTTCTG
CATGTTCTCATAAATCTTGTTGTAATCAAGGCTTTTGAACTCATCCCACT
CAGTCAGAATGCAAATCCCATGGGCGCCCTTCGTCGCCTCGTACGCGTCC
C
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp07 |
chromosome |
Pp07:5248235..5248235. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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