|
|
Marker Overview
| Name | s7_18712855 |
|---|
| dbSNP ID | N/A |
|---|
| SNP Array ID | | Cherry 6+9K SNP array: | s7_18712855 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | A/G |
|---|
| 5' Flanking Sequence | ACCCAATTCAGTCTGCTCATAATCAGGATTTTGATCTTCTCTTCGCTCCTTTGCTCTGTC
TCTGTATTTTGGCAACTCCGGCTGTTCTGCTTTCTCCTCTCTGCATGCAGCACCACATAA
ACATAACATCAAACACATAATCTACATTCA |
|---|
| 3' Flanking Sequence | AAATTCATTTTTCAATGTCTGAAAAGCTAATTTAATCCCAGATTTTAGCAAAACAGGTTC
ATTACCCACATAAAAAAGGGTACAAAATTAAGATAATAATAATAAAATTTTAAGCTTTAG
AAAAATAAAAAAAAACATGGTGCTGATGCC |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intragenic SNPs |
|---|
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s7_18712855 ID=s7_18712855; Name=s7_18712855; organism=Prunus avium; type=genetic_marker; length=301bp
ACCCAATTCAGTCTGCTCATAATCAGGATTTTGATCTTCTCTTCGCTCCT
TTGCTCTGTCTCTGTATTTTGGCAACTCCGGCTGTTCTGCTTTCTCCTCT
CTGCATGCAGCACCACATAAACATAACATCAAACACATAATCTACATTCA
RAAATTCATTTTTCAATGTCTGAAAAGCTAATTTAATCCCAGATTTTAGC
AAAACAGGTTCATTACCCACATAAAAAAGGGTACAAAATTAAGATAATAA
TAATAAAATTTTAAGCTTTAGAAAAATAAAAAAAAACATGGTGCTGATGC
C
|
