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Marker Overview
| Name | s8_17263343 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | T/C |
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| 5' Flanking Sequence | TGGGAACTTTTTGACATGATCTTGCCCAAGGAAAGATATGCGCTTGCTTGACAGCAGTTG
GATCAGAGTTACCGCACTCGAGGCGACTGTTGGTAGGTTTGATTCCCATCCAGCCTGGGG
TGAAGCGGCGAGCGATGATGCAGCGGCTTC |
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| 3' Flanking Sequence | GGCCTTGTCGATGAGCCATAGGATGAGTTGAACGGGGCCTAGGCTCCCTTGAATGTTCAT
TGGCAGATTCAATCCGTTCCAATGTCTCCACAACATCCTTCATCGATGGCCGGTTTTTCT
GTTCAGATTCAATGCACTTTAGAGCAAGCT |
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| Species | Prunus avium |
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| Publication | [view all] |
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| Contact | Patricio Hinrichsen
Stijn Vanderzande
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| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
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Publications
| Year | Publication |
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| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s8_17263343 ID=s8_17263343; Name=s8_17263343; organism=Prunus avium; type=genetic_marker; length=301bp
TGGGAACTTTTTGACATGATCTTGCCCAAGGAAAGATATGCGCTTGCTTG
ACAGCAGTTGGATCAGAGTTACCGCACTCGAGGCGACTGTTGGTAGGTTT
GATTCCCATCCAGCCTGGGGTGAAGCGGCGAGCGATGATGCAGCGGCTTC
YGGCCTTGTCGATGAGCCATAGGATGAGTTGAACGGGGCCTAGGCTCCCT
TGAATGTTCATTGGCAGATTCAATCCGTTCCAATGTCTCCACAACATCCT
TCATCGATGGCCGGTTTTTCTGTTCAGATTCAATGCACTTTAGAGCAAGC
T
Alignments
| Feature Name | Type | Location | Analysis |
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| Pp08 |
chromosome |
Pp08:18007771..18007771. |
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1) |
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