AX-89812425, AX-89812425 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89812425
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88811810
TypeSNP
SNP AllelesA/G
Probe 1AX-89812425.AX-89812425: TTGGGTTACGGCGTAGTATCCTAACCCAGG
5' Flanking SequenceGTTGCAACCCAATGCCGCATCATAGGATTGGGTCC
3' Flanking SequenceAGTACAAGGTCTACCCAACTTATGATTTCGCTTGT
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentCodon-based SNP
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Sequence
>AX-89812425 ID=AX-89812425; Name=AX-89812425; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
GTTGCAACCCAATGCCGCATCATAGGATTGGGTCCRAGTACAAGGTCTAC
CCAACTTATGATTTCGCTTGT
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:4853612..4853672+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb1 chromosome Fvb1:3692132..3692202+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:20441546..20441616- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6-2 chromosome Fvb6-2:22560034..22560104+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-1 chromosome Fvb6-1:31221628..31221698+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb5-3 chromosome Fvb5-3:7275551..7275621+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-4 chromosome Fvb1-4:3025517..3025587+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb1-3 chromosome Fvb1-3:3320264..3320334+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-3 chromosome Fvb6-3:36773565..36773635- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb5-4 chromosome Fvb5-4:18122822..18122892- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb5-2 chromosome Fvb5-2:19196297..19196367- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb5-1 chromosome Fvb5-1:22434527..22434597- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG1 chromosome LG1:4677250..4677250. Fragaria vesca Whole Genome v1.1 Assembly & Annotation