AX-89869305, AX-89869305 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89869305
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88817547
TypeSNP
SNP AllelesT/G
Probe 1AX-89869305.AX-89869305: CATACTATCATATAAGTTAACAAAATGGAC
5' Flanking SequenceGATCGATGAACTTCTTCTTTATCTATTCTCTCGCC
3' Flanking SequenceCAGGTAAAACAATTGAATATACTATCATACAAGGT
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentCodon-based SNP
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Sequence
>AX-89869305 ID=AX-89869305; Name=AX-89869305; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
GATCGATGAACTTCTTCTTTATCTATTCTCTCGCCKCAGGTAAAACAATT
GAATATACTATCATACAAGGT
Alignments
Feature NameTypeLocationAnalysis
Fvb1 chromosome Fvb1:18530210..18530280+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:15481026..15481072- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb7-4 chromosome Fvb7-4:733511..733557+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-3 chromosome Fvb6-3:23043195..23043231+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb3-1 chromosome Fvb3-1:21818686..21818732+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb2-2 chromosome Fvb2-2:20334366..20334413+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb2-2 chromosome Fvb2-2:3267251..3267289+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb2-1 chromosome Fvb2-1:22254351..22254398+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb7-3 chromosome Fvb7-3:19780267..19780314- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-3 chromosome Fvb6-3:14483471..14483518- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-3 chromosome Fvb6-3:4644596..4644643- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb5-4 chromosome Fvb5-4:16839875..16839915- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb4-3 chromosome Fvb4-3:15415735..15415781- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb3-1 chromosome Fvb3-1:29079831..29079871- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb2-4 chromosome Fvb2-4:731133..731180- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG1 chromosome LG1:16548870..16548870. Fragaria vesca Whole Genome v1.1 Assembly & Annotation