AX-89812669, AX-89812669 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89812669
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88827980
TypeSNP
SNP AllelesT/G
Probe 1AX-89812669.AX-89812669: AATATAGGAAGAAGAGGAGAAAGAAGCCGG
5' Flanking SequenceCTGAATTATATCCTTCTTCTCCTCTTTCTTCGGCC
3' Flanking SequenceAGTTTGGTACAACTTCGCTTTTAAAAAAAATCAGC
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentCodon-based SNP
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Fvb7chromosomeFvb7:17486425..17486462 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6chromosomeFvb6:3423305..3423343 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6chromosomeFvb6:19258335..19258372 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6chromosomeFvb6:32462261..32462300 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb4chromosomeFvb4:20539696..20539726 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb3chromosomeFvb3:29815608..29815648 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb3chromosomeFvb3:2944879..2944920 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb3chromosomeFvb3:17685971..17686009 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb3chromosomeFvb3:10166443..10166481 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb2chromosomeFvb2:24866664..24866734 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb7chromosomeFvb7:13166221..13166257 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb5chromosomeFvb5:683057..683096 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb5chromosomeFvb5:3810851..3810886 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb4chromosomeFvb4:15193104..15193146 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb3chromosomeFvb3:29662481..29662515 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb3chromosomeFvb3:26800577..26800610 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:22661497..22661533 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb1chromosomeFvb1:8901541..8901574 -Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
Fvb6-1chromosomeFvb6-1:25670610..25670649 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb4-1chromosomeFvb4-1:9645789..9645827 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb3-4chromosomeFvb3-4:2451907..2451946 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb3-4chromosomeFvb3-4:2451571..2451610 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb1-1chromosomeFvb1-1:3865947..3865986 +Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
Fvb7-1chromosomeFvb7-1:23531673..23531714 -Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1n/a
LG2chromosomeLG2:18632046..18632046 .Fragaria vesca Whole Genome v1.1 Assembly & Annotationn/a
Sequence
>AX-89812669 ID=AX-89812669; Name=AX-89812669; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
CTGAATTATATCCTTCTTCTCCTCTTTCTTCGGCCKAGTTTGGTACAACT
TCGCTTTTAAAAAAAATCAGC