AX-89906850, AX-89906850 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89906850
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88892854
TypeSNP
SNP AllelesA/T
Probe 1AX-89906850.AX-89906850_probe1: GTAAGTGCTTTGGATATAAAAGATGTGGGA
Probe 2AX-89906850.AX-89804739_probe2: GTAAGTGCTTTGGATATAAAAGATGTGGGT
5' Flanking SequenceTGGGATATATATATATGGTAGAGAGAAGGAGAAAA
3' Flanking SequenceGGGTGTAGAAAATATAGGTTTCGTGAATGTGTGCT
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
Alignment of Fragaria x ananassa 90K Array SNPs to Fragaria vesca Genome v2.02016-11-22
90K SNP array for the cultivated strawberry Fragaria x ananassa2014-07-23
Sequence
>AX-89906850 ID=AX-89906850; Name=AX-89906850; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
TGGGATATATATATATGGTAGAGAGAAGGAGAAAAWGGGTGTAGAAAATA
TAGGTTTCGTGAATGTGTGCT
Alignments
Feature NameTypeLocationAnalysis
Fvb4 chromosome Fvb4:11800446..11800512+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:11781975..11782038+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb1 chromosome Fvb1:15788469..15788535+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb7 chromosome Fvb7:11695353..11695423- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb7 chromosome Fvb7:11705392..11705464- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:20548180..20548479- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:20541629..20541928- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:20088497..20088589- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
LG7 chromosome LG7:3798302..3798302. Fragaria vesca Whole Genome v1.1 Assembly & Annotation