AX-89850869, AX-89850869 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89850869
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88893888
TypeSNP
SNP AllelesA/T
Probe 1AX-89850869.AX-89850869_probe1: TACAGTTTCCGAACCACGTTTTTGGGGTTA
Probe 2AX-89850869.AX-89911413_probe2: TACAGTTTCCGAACCACGTTTTTGGGGTTT
5' Flanking SequenceACACAAATGTCAAAGGCTTGGTGCAAAAACCCCAA
3' Flanking SequenceGAGGGAAAATGCACCAAACAAGATTATTCCATTAA
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
Alignment of Fragaria x ananassa 90K Array SNPs to Fragaria vesca Genome v2.02016-11-22
90K SNP array for the cultivated strawberry Fragaria x ananassa2014-07-23
Sequence
>AX-89850869 ID=AX-89850869; Name=AX-89850869; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
ACACAAATGTCAAAGGCTTGGTGCAAAAACCCCAAWGAGGGAAAATGCAC
CAAACAAGATTATTCCATTAA
Alignments
Feature NameTypeLocationAnalysis
Fvb7 chromosome Fvb7:1074177..1074247+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb7 chromosome Fvb7:8877425..8877496+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:5768090..5768161+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:13773639..13773709+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:7047734..7047782+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:23143220..23143282- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:12206502..12206573- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:13636907..13636978- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
LG7 chromosome LG7:6176879..6176879. Fragaria vesca Whole Genome v1.1 Assembly & Annotation