JPsnpHou00184, JPsnpHou00184 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00184
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	ACGACGTACGGAAAAGAAGGTAGAAACAAAAAAGTTTGAAATTTAATGACAAGCAGATGA AAGCTGCCAAAAGGAGTGGAAGTCGGGTCCAACAGGAGAAAGTCAAGGATAAAGCTAAGT CTGCAGCAGCTAAGGAAGCATCAAAGAACAAGGCCAAGGGAAAAGTTGATGAAGATGATG CACCAGCTGAGGCTCCTAGGAAATGGAGAGATTACAGTGTGGAGTTCCACTTTCCTGAAC CTACAGAGCTTACTCCTCCACTTTTGCAACTTGTTGAAGTCAGCTTCAGTTATCCGAATC GGGAGGATTTCAGGCTGTCAGGTGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCA TTGTTGGACCTAACGGAGCTGGAAAGTCTACTCTGCTCAACCTTCTTGCAGGTGATTTGG TTCCTTCGGAGGGTGAAGTACGGAGGAGTCAGAAGTTGAGGATCGGTAGGTATTCGCAAC ACTTTGTGGACCTCCTGACAATGGGCGAGACCCCGGTTCAGTACCTTCTCCGGCTTCATC CAGACCAAGAGGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGCTTGGAAAATTTGGAC TCCCCAGCCACAACCATCTCACTCCCATTGCAAAATTATCTGGAGGGCAGAAAGCCCGAG TTGTGTTCACGTCGATATCCATGTCAAGGCCCCACATTTTGCTGTTGGATGAACCAACGA ATCATTTGGATATGCAGAGTATTGATGCACTGGCCGATGCACTTGACGAATTCACCGGTG GAGTTGTACTGGTGAGTCATGATTCTAGGCTGATATCGCGCGTGTGCGAGAACGAAGAGA GGAGTGAAATTTGGGTTGTTGAGAATGGCACGGTGACCCCGTACCCTGGGACTTTTGAGG AGTACAAGGAGGAGCTACAAAGAGAAATTAAAGAGGAGGTCGATGACTGAGGTTTGCACT TTTTATAGCTGTAATATTTTTGCTGATCATTCTAAGAATTCCATGAGTTTGCTTGTTG
3' Flanking Sequence	TTGCTCATGTAATTTAGTTGGTTTTTCTGATCCGAATGTAACAATTAATAGAGATGTGTT AAATTTTTATATGCAGTTCTAGACGCGAAACGAGGCCTACAAGAACGGTATTTGAACTTG GTTGTCAGAATATTATACGTTGATTCTAGACTATATTTGAATTTAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 1019

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	58.94	JPsnpHou00184	View

Sequence

>JPsnpHou00184 ID=JPsnpHou00184; Name=JPsnpHou00184; organism=Pyrus pyrifolia; type=genetic_marker; length=1186bp
ACGACGTACGGAAAAGAAGGTAGAAACAAAAAAGTTTGAAATTTAATGAC
AAGCAGATGAAAGCTGCCAAAAGGAGTGGAAGTCGGGTCCAACAGGAGAA
AGTCAAGGATAAAGCTAAGTCTGCAGCAGCTAAGGAAGCATCAAAGAACA
AGGCCAAGGGAAAAGTTGATGAAGATGATGCACCAGCTGAGGCTCCTAGG
AAATGGAGAGATTACAGTGTGGAGTTCCACTTTCCTGAACCTACAGAGCT
TACTCCTCCACTTTTGCAACTTGTTGAAGTCAGCTTCAGTTATCCGAATC
GGGAGGATTTCAGGCTGTCAGGTGTTGATGTTGGTATTGATATGGGGACT
CGTGTTGCCATTGTTGGACCTAACGGAGCTGGAAAGTCTACTCTGCTCAA
CCTTCTTGCAGGTGATTTGGTTCCTTCGGAGGGTGAAGTACGGAGGAGTC
AGAAGTTGAGGATCGGTAGGTATTCGCAACACTTTGTGGACCTCCTGACA
ATGGGCGAGACCCCGGTTCAGTACCTTCTCCGGCTTCATCCAGACCAAGA
GGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGCTTGGAAAATTTGGAC
TCCCCAGCCACAACCATCTCACTCCCATTGCAAAATTATCTGGAGGGCAG
AAAGCCCGAGTTGTGTTCACGTCGATATCCATGTCAAGGCCCCACATTTT
GCTGTTGGATGAACCAACGAATCATTTGGATATGCAGAGTATTGATGCAC
TGGCCGATGCACTTGACGAATTCACCGGTGGAGTTGTACTGGTGAGTCAT
GATTCTAGGCTGATATCGCGCGTGTGCGAGAACGAAGAGAGGAGTGAAAT
TTGGGTTGTTGAGAATGGCACGGTGACCCCGTACCCTGGGACTTTTGAGG
AGTACAAGGAGGAGCTACAAAGAGAAATTAAAGAGGAGGTCGATGACTGA
GGTTTGCACTTTTTATAGCTGTAATATTTTTGCTGATCATTCTAAGAATT
CCATGAGTTTGCTTGTTGsTTGCTCATGTAATTTAGTTGGTTTTTCTGAT
CCGAATGTAACAATTAATAGAGATGTGTTAAATTTTTATATGCAGTTCTA
GACGCGAAACGAGGCCTACAAGAACGGTATTTGAACTTGGTTGTCAGAAT
ATTATACGTTGATTCTAGACTATATTTGAATTTAAA