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Marker Overview
| Name | JPsnpHou00630 |
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| dbSNP ID | N/A |
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| Type | SNP |
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| SNP Alleles | A/G |
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| 5' Flanking Sequence | AGAGAGACATAATCCATCCGTCCACATTATATCAAAACTCACATAGGTCCCAAACCACAT
CAAATATCCACAATAACCATCACTTAGCTACCNTAAAAAATCGCTCACTCCTCAACCGCG
CTATTATTTTCGACTCGAAACTGGTTTTTCCTTGTTTATTAACATATAACGCAACAATTA
AGCCTCGGCGATCTCAGCGGATTCTGCAGCAGCTAGGATCAGCTCAGGCTGGATGCCTCC
GACGTATGATCCATCCAAAGCGTTGGGGAGTCCCAGTGCCTTTAATGCCAAGTGAGCTGC
CTTTTGCCCTGAGATCATCATGGCTCCGAATGTAGGTCCCATTCTTGGGGATCCATCAAT
CTCAGCAACTTCCATGCCGGTGACGATCATTCCTGGCACAATCACCCCATCTTATCATCT
TCTCTCTCTCTTTCTCTCGCATCAATCAATGGCAACCATGGCTTCCACCCTCACCTCCTC
CTCCCTCACCGCCAAGCTCCAGAAGTCCTCCCTCCTCGACTCCTCTTTCCATGGCGCTCC
CATGGTCCGCCTTCAGCCGGCCAAGGCGGCCCCCGCCAACAACGGCGGCCTCTCCGTCTC
CATGTCTGCCAACGGCTTGACCCCCTCCTACGACTTGAGCGCTTTCAAGTTCGACCCCAT
CAAGGAATCCATCGTCTCCCGGGAGATGACCAGGCGCTACATGACTGACATGATCACCTA
CGCCGACACAGACGTCGTTGTCGTCGGTGCTGGCTCCGCCGGGCTATCCTGCGCCTACGA
ACTCAGCAAGAACCCCGACGTTCAGGTGGCCATCATCGAGCAGTCCGTCAGCCCCGGCGG
AGGTGCATGGCTCGGTGGCCAGCTCTTCTCTGCCATGGTTGTGCGCAAACCCGCCCATCT
CTTCCTTAACGAGCTCGGCATTGACTACGATGAGCAAGACAACTACGTTGTCATCAAGCA
CGCCGCCCTATTCACCTCCACCATCATGAGCAAGCTCCTTGCCC |
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| 3' Flanking Sequence | GCCCAACGTGAAGCTCTTCAACGCTGTGGCTGCAGAGGACTTGATCATTAAGGGTGGCAG
AGTTGGTGGCGTGGTCACCAACTGGGCCTTGGTCTCAATGAACCACGACACACAGTCGTG
CATGGACCCCAACGTCATGGAGGCCAAGGTTGTGGTGAGCTCATGTGGTCACGACGGACC
CATGGGAGCCACCGGCGTCAAGAGGTTGAGGAGCGTTGGGATGATTGAGAGCGTGCCCGG
GATGAAGGCCTTGGACATGAACGCAGCTGAGGATGCTATCGTGAAGCTCACAAGGGAAAT
TGTGCCAGGAATGATCGTCACCGGCATGGAAGTTGCTGAGATTGATGGATCCCCAAGAAT
GGGACCTACATTCGGAGCCATGATGATCTCAGGGCAAAAGGCAGCTCACTTGGCATTAAA
GGCACTGGGACTCCCCAACGCTTTGGATGGATCATACGTCGGAGGCATCCAGCCTGAGCT
GATCCTAGCTGCTGCAGAATCCGCTGAGATCGCCGAGGCTTAATTGTTGCGTTATATGTT
AATAAACAAGGAAAAAACCAGTTTCGAGTCGAAAATAATAGCGCGGTTGAGGAGTGAGCG
ATTTTTTATGGTAGCTAAGTGATGGTTATTGTGGATATTGATGTGGTTTGGACCTATGTG
AGTTTTGATAATAATGTGGACGGTATGGATTATGT |
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| Species | Pyrus pyrifolia |
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| Publication | [view all] |
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| Contact | Toshiya Yamamoto
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| Comment | SNP position in sequence: 1005 |
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Publications
| Year | Publication |
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| 2014 | Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863. |
Sequence
>JPsnpHou00630 ID=JPsnpHou00630; Name=JPsnpHou00630; organism=Pyrus pyrifolia; type=genetic_marker; length=1700bp
AGAGAGACATAATCCATCCGTCCACATTATATCAAAACTCACATAGGTCC
CAAACCACATCAAATATCCACAATAACCATCACTTAGCTACCNTAAAAAA
TCGCTCACTCCTCAACCGCGCTATTATTTTCGACTCGAAACTGGTTTTTC
CTTGTTTATTAACATATAACGCAACAATTAAGCCTCGGCGATCTCAGCGG
ATTCTGCAGCAGCTAGGATCAGCTCAGGCTGGATGCCTCCGACGTATGAT
CCATCCAAAGCGTTGGGGAGTCCCAGTGCCTTTAATGCCAAGTGAGCTGC
CTTTTGCCCTGAGATCATCATGGCTCCGAATGTAGGTCCCATTCTTGGGG
ATCCATCAATCTCAGCAACTTCCATGCCGGTGACGATCATTCCTGGCACA
ATCACCCCATCTTATCATCTTCTCTCTCTCTTTCTCTCGCATCAATCAAT
GGCAACCATGGCTTCCACCCTCACCTCCTCCTCCCTCACCGCCAAGCTCC
AGAAGTCCTCCCTCCTCGACTCCTCTTTCCATGGCGCTCCCATGGTCCGC
CTTCAGCCGGCCAAGGCGGCCCCCGCCAACAACGGCGGCCTCTCCGTCTC
CATGTCTGCCAACGGCTTGACCCCCTCCTACGACTTGAGCGCTTTCAAGT
TCGACCCCATCAAGGAATCCATCGTCTCCCGGGAGATGACCAGGCGCTAC
ATGACTGACATGATCACCTACGCCGACACAGACGTCGTTGTCGTCGGTGC
TGGCTCCGCCGGGCTATCCTGCGCCTACGAACTCAGCAAGAACCCCGACG
TTCAGGTGGCCATCATCGAGCAGTCCGTCAGCCCCGGCGGAGGTGCATGG
CTCGGTGGCCAGCTCTTCTCTGCCATGGTTGTGCGCAAACCCGCCCATCT
CTTCCTTAACGAGCTCGGCATTGACTACGATGAGCAAGACAACTACGTTG
TCATCAAGCACGCCGCCCTATTCACCTCCACCATCATGAGCAAGCTCCTT
GCCCrGCCCAACGTGAAGCTCTTCAACGCTGTGGCTGCAGAGGACTTGAT
CATTAAGGGTGGCAGAGTTGGTGGCGTGGTCACCAACTGGGCCTTGGTCT
CAATGAACCACGACACACAGTCGTGCATGGACCCCAACGTCATGGAGGCC
AAGGTTGTGGTGAGCTCATGTGGTCACGACGGACCCATGGGAGCCACCGG
CGTCAAGAGGTTGAGGAGCGTTGGGATGATTGAGAGCGTGCCCGGGATGA
AGGCCTTGGACATGAACGCAGCTGAGGATGCTATCGTGAAGCTCACAAGG
GAAATTGTGCCAGGAATGATCGTCACCGGCATGGAAGTTGCTGAGATTGA
TGGATCCCCAAGAATGGGACCTACATTCGGAGCCATGATGATCTCAGGGC
AAAAGGCAGCTCACTTGGCATTAAAGGCACTGGGACTCCCCAACGCTTTG
GATGGATCATACGTCGGAGGCATCCAGCCTGAGCTGATCCTAGCTGCTGC
AGAATCCGCTGAGATCGCCGAGGCTTAATTGTTGCGTTATATGTTAATAA
ACAAGGAAAAAACCAGTTTCGAGTCGAAAATAATAGCGCGGTTGAGGAGT
GAGCGATTTTTTATGGTAGCTAAGTGATGGTTATTGTGGATATTGATGTG
GTTTGGACCTATGTGAGTTTTGATAATAATGTGGACGGTATGGATTATGT
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