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Marker Overview
Name | JPsnpHou00128 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | C/G |
5' Flanking Sequence | CCCTCACTCACCAAGTTAAGCTTTGTGACTATGGAAGTGCAAAAGTTCTGATCAAGGGGG
AAGCAAACATATCATACATATGTTCTCGTTACTATCGGGCTCCAGAACTCATCTTTGGTG
CGACAGAATATACAACATCCATTGACATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTCC
TTCTAGGCCAGCCACTATTTCCAGGAGAGAATGCAGTGGACCAACTTGTAGAGATTATCA
AGGTTCTTGGCACTCCAACTAGAGAAGAGATTCGATGCATGAATCCAAATTACACTGATT
TTAGGTTCCCTCAGATTAAAGCTCATCCTTGGCATAAGGTTTTCCACAAGAGAATGCCTC
CCGAAGCAATTGACCTTGCTTCACGACTTCTTCAATATTCACCGAGTCTACGCTGCACTG
CGCTAGAGGCATGCACACATCCTTTCTTTGACGATCTCCGTGAGCCCAATGCTCGCCTAC
CAAATGGTCGCCCGTTGCCGCCACTTTTCAACTTCAAACAAGAATTAAACGGAGTATCAC
CTGAATTGATCAAGAGGCTCATACCAGAGCATGTGCGGCAGCAGGCTGGACTTGGATTCC
CACAACCAGTCAGAACTTAAACGTAAAGTGATGAAACAAGGAATTATCTTTTGTACTAGT
GGACGGATGTGAAGCAAAAGAGGGCCTCTTTGTGGTCTATATATAACCGAGCATTTTGGC
CTAATCTGCTGTTCTCGCCTTCCAAAGATATACATACACAATGGCTCTCTGGCTTAACCT
GGAAGTCGTCGATCATATCTACCGTCATGTTGGCCTAAACATACCGTCTTCTTGCGTCTG
TACATCATTTTGATTGTAAGGATTCCAGAAAGCCAAAGGCACAAGGTAATGTTATCCAAA
TCTAGCTAGTAGTGGATGTAAAAA |
3' Flanking Sequence | TCCAGCAGGAGCCCGAGGGGCGAAATAGTAGTGCGGCATGTGTTTTACTTTTATTATCTG
TGTTGTATCTACTGTCTGGTTGCGGTATCGTCTCAAATTATATCTTTACTATTGATTACT
GTCTCCTCCAACACTGCAGTTGTGGATAATTTCAAATCTnTGTTGTTTGACAGCCAGAGC
TTTGAGCTTCATCATGTAATTGAATATTCTTGCTTGGTATTTTTCTTCTCGGTTATTTTT
CCTTGAGGATGTAATAATACTCCGAAAACTTTGATTTTATTTCTTAATTAAGGTCAAAAC
CAAACAACAAATTTAGCCTCCCAA |
Species | Pyrus pyrifolia |
Publication | [view all] |
Contact | Toshiya Yamamoto
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Comment | SNP position in sequence: 925 |
Publications
Year | Publication |
2014 | Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863. |
Sequence
>JPsnpHou00128 ID=JPsnpHou00128; Name=JPsnpHou00128; organism=Pyrus pyrifolia; type=genetic_marker; length=1249bp CCCTCACTCACCAAGTTAAGCTTTGTGACTATGGAAGTGCAAAAGTTCTG ATCAAGGGGGAAGCAAACATATCATACATATGTTCTCGTTACTATCGGGC TCCAGAACTCATCTTTGGTGCGACAGAATATACAACATCCATTGACATCT GGTCAGCTGGTTGTGTCCTTGCTGAGCTCCTTCTAGGCCAGCCACTATTT CCAGGAGAGAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGG CACTCCAACTAGAGAAGAGATTCGATGCATGAATCCAAATTACACTGATT TTAGGTTCCCTCAGATTAAAGCTCATCCTTGGCATAAGGTTTTCCACAAG AGAATGCCTCCCGAAGCAATTGACCTTGCTTCACGACTTCTTCAATATTC ACCGAGTCTACGCTGCACTGCGCTAGAGGCATGCACACATCCTTTCTTTG ACGATCTCCGTGAGCCCAATGCTCGCCTACCAAATGGTCGCCCGTTGCCG CCACTTTTCAACTTCAAACAAGAATTAAACGGAGTATCACCTGAATTGAT CAAGAGGCTCATACCAGAGCATGTGCGGCAGCAGGCTGGACTTGGATTCC CACAACCAGTCAGAACTTAAACGTAAAGTGATGAAACAAGGAATTATCTT TTGTACTAGTGGACGGATGTGAAGCAAAAGAGGGCCTCTTTGTGGTCTAT ATATAACCGAGCATTTTGGCCTAATCTGCTGTTCTCGCCTTCCAAAGATA TACATACACAATGGCTCTCTGGCTTAACCTGGAAGTCGTCGATCATATCT ACCGTCATGTTGGCCTAAACATACCGTCTTCTTGCGTCTGTACATCATTT TGATTGTAAGGATTCCAGAAAGCCAAAGGCACAAGGTAATGTTATCCAAA TCTAGCTAGTAGTGGATGTAAAAAsTCCAGCAGGAGCCCGAGGGGCGAAA TAGTAGTGCGGCATGTGTTTTACTTTTATTATCTGTGTTGTATCTACTGT CTGGTTGCGGTATCGTCTCAAATTATATCTTTACTATTGATTACTGTCTC CTCCAACACTGCAGTTGTGGATAATTTCAAATCTnTGTTGTTTGACAGCC AGAGCTTTGAGCTTCATCATGTAATTGAATATTCTTGCTTGGTATTTTTC TTCTCGGTTATTTTTCCTTGAGGATGTAATAATACTCCGAAAACTTTGAT TTTATTTCTTAATTAAGGTCAAAACCAAACAACAAATTTAGCCTCCCAA
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