JPsnpHou00362, JPsnpHou00362 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00362
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GAATTCGGCAGTGAAGAATGCCAAGGAGCCATGGAAACATGTGTTCCATGTCGTGACTGA TAAGATGAACCTCGGAGCAATGCAGGTTATGTTTAAGAGCAAGGACTATAATGGGTCACA TGTTGAAGTGAAGGCTGTGGAGGATTACAAGTTTTTGAATTCTTCATATGTGCCGGTGCT AAAGCAATTAGAGAATGCGAAGTTGCAGTCATTTTACTTTGAAAATAAGCTCGAGAATGC AACCAAAGACGCAACAAACATGAAGTTCAGGAACCCCAAGTATTTGTCCATATTGAACCA TTTGAGGTTTTATTTGCCGGAAATGTACCCAAAATTGCACAGGATTCTATTCTTGGATGA CGATATAGTGGTTCAGAAGGATTTAACTGGTCTGTGGAGGATTGATATGGATGGGAAGGT GAATGGGGCGGTTGAGACATGTTTTGGGTCATTTCATCGGTACGCACAGTACATGAATTT CTCACATCCTTTGATTAAGGAGAAGTTTAATCCCAAGGCATGCGGCGTGGGCTTATGGAA TGAACTTCTTTGATTTGGATGCTTGGAGAAAGCAAAATTGTACTGCTGAGTATCATTACT GGCAAAATCTGAACGAGAACCGTAGTCTGTGGAAATTGGGGACACTTCCCCCAGGTTTAA TCACATTTTACTCGACAACAAAGCCACTAGACAAGTCATGGCACGTTCTGGGACTTGGCT ATAATCCGAGCATCAGCATGGACGAGATTCGCAATGCTGCAGTGGTGCACTTCAACGGGA ATATGAAGCCTTGGCTTGATATTGCCATGAACCAGTTCAAGCCACTCTGGGAAAAACACG TCGATTATGATATGGAGTTTGTTCAGGCCTGCAATTTTGGTCT
3' Flanking Sequence	TAAATGAATCGGGTTTGTTGAAGCTCTAGTTGGAGGATCTGCCAATGCTAGTCCTACAGC TCGTAAGCTATCCCTCTTTTGGATTCCATTGTTGCTCGTTGCACGTTTACTAATTATTCA TAGTATAGGGACGATATGCATCAATCTAAGTGTAGCATACCTGTTTTCCATGTTAATCTA GGTCTTCTTTTTATTGTTTCATACAACTTAAGTTCACTTGGAAGATGATAATTACTGAAG TTGATGGACATTTACGGTAAACTGCAAAATACGTCGCTTGTTGTTCGTCGATTTCTTGTC ATATCATTGTGACATTCGTCTATTAAACGAAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 884

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	117.44	JPsnpHou00362	View

Sequence

>JPsnpHou00362 ID=JPsnpHou00362; Name=JPsnpHou00362; organism=Pyrus pyrifolia; type=genetic_marker; length=1216bp
GAATTCGGCAGTGAAGAATGCCAAGGAGCCATGGAAACATGTGTTCCATG
TCGTGACTGATAAGATGAACCTCGGAGCAATGCAGGTTATGTTTAAGAGC
AAGGACTATAATGGGTCACATGTTGAAGTGAAGGCTGTGGAGGATTACAA
GTTTTTGAATTCTTCATATGTGCCGGTGCTAAAGCAATTAGAGAATGCGA
AGTTGCAGTCATTTTACTTTGAAAATAAGCTCGAGAATGCAACCAAAGAC
GCAACAAACATGAAGTTCAGGAACCCCAAGTATTTGTCCATATTGAACCA
TTTGAGGTTTTATTTGCCGGAAATGTACCCAAAATTGCACAGGATTCTAT
TCTTGGATGACGATATAGTGGTTCAGAAGGATTTAACTGGTCTGTGGAGG
ATTGATATGGATGGGAAGGTGAATGGGGCGGTTGAGACATGTTTTGGGTC
ATTTCATCGGTACGCACAGTACATGAATTTCTCACATCCTTTGATTAAGG
AGAAGTTTAATCCCAAGGCATGCGGCGTGGGCTTATGGAATGAACTTCTT
TGATTTGGATGCTTGGAGAAAGCAAAATTGTACTGCTGAGTATCATTACT
GGCAAAATCTGAACGAGAACCGTAGTCTGTGGAAATTGGGGACACTTCCC
CCAGGTTTAATCACATTTTACTCGACAACAAAGCCACTAGACAAGTCATG
GCACGTTCTGGGACTTGGCTATAATCCGAGCATCAGCATGGACGAGATTC
GCAATGCTGCAGTGGTGCACTTCAACGGGAATATGAAGCCTTGGCTTGAT
ATTGCCATGAACCAGTTCAAGCCACTCTGGGAAAAACACGTCGATTATGA
TATGGAGTTTGTTCAGGCCTGCAATTTTGGTCTyTAAATGAATCGGGTTT
GTTGAAGCTCTAGTTGGAGGATCTGCCAATGCTAGTCCTACAGCTCGTAA
GCTATCCCTCTTTTGGATTCCATTGTTGCTCGTTGCACGTTTACTAATTA
TTCATAGTATAGGGACGATATGCATCAATCTAAGTGTAGCATACCTGTTT
TCCATGTTAATCTAGGTCTTCTTTTTATTGTTTCATACAACTTAAGTTCA
CTTGGAAGATGATAATTACTGAAGTTGATGGACATTTACGGTAAACTGCA
AAATACGTCGCTTGTTGTTCGTCGATTTCTTGTCATATCATTGTGACATT
CGTCTATTAAACGAAG