JPsnpHou00099, JPsnpHou00099 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00099
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GAGATGGGCTCTGTGTGGGGCAGACTTGGTTCTGAGGTAACTGTTGTTGAGTTTGGACCT GATATTGTCCCAACAATGGACTCGGAAATCCGCAAGCAGTTTCAGCGTTCCCTTGAGAAG CAAGGGATGAAGTTCATGCTCAAAACAAAGGTGGTTGGAGTTGATACCTCTGGAGATGGT GTGAAGTTGACTCTTGAACCAGCATCCGGAGGCGACCAGACATCCTTTGAAGCTGATGTT GTTCTTGTATCTGCTGGTAGGGTTCCATTCACATCTGGGCTTGATTTAGACAAGATAGGA GTTGAAATGGACAAGGGAGGGAGAATTTTAGTGAATGAGAGGTTTTCTACAAATGTCTCG GGTGTTTACGCAATTGGAGATGTTATTCCTGGACCTATGTTGGCCCATAAGGCAGAAGAG GATGGGGTTGCATGCGTGGAGTTCTTAGCCGGTAAGGTTGGCCATGTGGATTATGACAAG GTCCCTGGGGTCGTCTACACTCACCCTGAGGTTGCATCTGTTGGAAAAACTGAGGAACAA GTGAAGGCCTCTGGCGTTGCATACCGAGTTGGAAAGTTCCCTTTCATGGCAAACAGCAGA GCCAAGGCAATAGACAATGCTGAAGGACTCGTCAAGATATTGGCCGAGAAGGAAACAGAT AAGATATTGGGAGTTCATATCATGGCATCCAATGCCGGAGAGCTCATTCACGAGGCGGCC ATAGCCTTGCAGTATGATGCATCGAGTGAGGACATTGCACGCGTTTGCCATGCACATCCA ACCATGAGCGAGGCGTTGAAGGAAGCTGCCATGGCTACATATGACAAGCCCATTCACATC TAGAAAAGTCATTACTTGATTAA
3' Flanking Sequence	CTTCGTTTTCAATTTTTGTTTTTAAGAATTTTTGGAACGACTTGGTAAGAAGTTTCCATT TAGTTGTTTTAGCCTTCATCGAAGGTGGCAGATAAAAAGCGCTTGAAAACAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 864

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	93.13	JPsnpHou00099	View

Sequence

>JPsnpHou00099 ID=JPsnpHou00099; Name=JPsnpHou00099; organism=Pyrus pyrifolia; type=genetic_marker; length=976bp
GAGATGGGCTCTGTGTGGGGCAGACTTGGTTCTGAGGTAACTGTTGTTGA
GTTTGGACCTGATATTGTCCCAACAATGGACTCGGAAATCCGCAAGCAGT
TTCAGCGTTCCCTTGAGAAGCAAGGGATGAAGTTCATGCTCAAAACAAAG
GTGGTTGGAGTTGATACCTCTGGAGATGGTGTGAAGTTGACTCTTGAACC
AGCATCCGGAGGCGACCAGACATCCTTTGAAGCTGATGTTGTTCTTGTAT
CTGCTGGTAGGGTTCCATTCACATCTGGGCTTGATTTAGACAAGATAGGA
GTTGAAATGGACAAGGGAGGGAGAATTTTAGTGAATGAGAGGTTTTCTAC
AAATGTCTCGGGTGTTTACGCAATTGGAGATGTTATTCCTGGACCTATGT
TGGCCCATAAGGCAGAAGAGGATGGGGTTGCATGCGTGGAGTTCTTAGCC
GGTAAGGTTGGCCATGTGGATTATGACAAGGTCCCTGGGGTCGTCTACAC
TCACCCTGAGGTTGCATCTGTTGGAAAAACTGAGGAACAAGTGAAGGCCT
CTGGCGTTGCATACCGAGTTGGAAAGTTCCCTTTCATGGCAAACAGCAGA
GCCAAGGCAATAGACAATGCTGAAGGACTCGTCAAGATATTGGCCGAGAA
GGAAACAGATAAGATATTGGGAGTTCATATCATGGCATCCAATGCCGGAG
AGCTCATTCACGAGGCGGCCATAGCCTTGCAGTATGATGCATCGAGTGAG
GACATTGCACGCGTTTGCCATGCACATCCAACCATGAGCGAGGCGTTGAA
GGAAGCTGCCATGGCTACATATGACAAGCCCATTCACATCTAGAAAAGTC
ATTACTTGATTAAyCTTCGTTTTCAATTTTTGTTTTTAAGAATTTTTGGA
ACGACTTGGTAAGAAGTTTCCATTTAGTTGTTTTAGCCTTCATCGAAGGT
GGCAGATAAAAAGCGCTTGAAAACAA