JPsnpHou00502, JPsnpHou00502 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00502
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	TTCTTGGTCTCTTTTTCATTCCTGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCATC AAGATTTTGAAGATGCGCTACAGAAACTGCGCGGCAAAGATGCTGACATATCTGAGGAAG CAGAAGAAATCCAGGATTATATTGCAACTCTTGACTTGCTTCCTAAAGCCAAATTTCTGG ATTTGTTTCAAAGGAGATACTGGAGCTCACTCATTATCGGAGTTGGGCTGATGTTCTGTC AGCAACTGGGAGGAATCAACGGGGTCTGTTTCTATGTGAGCGATATTTTTGAACAAGCAG GTTATAGTTACCGGCATTGCTGCAGGCGTGATGGATAAAGCTGGACGCAAGCCTCTAATT TTGGTCTCTGCAACCGGGTTGGTGCTTGGCTGTCTCTTGACAGCAGTTTCATTCTTTCTG AAGGTTCATGAATTGGCACTCGACGCAGTTCCCATACTTGCTGTAACCGGCATACTGCTC TACATAGGAGCCTTTTCGATAGGAATGGGAGCAGTTCCTTGGGTTGTGATGTCCGAGATA TTCCCGATAAACATTAAAGGGCAGGCCGGAAGCTTAGCAACGCTGGTGAATTGGCTCTGC GCATGGTTGTGTTCCTACACTTTCAACTATCTTATGAGTTGGAGCTCCTACGGTACCTTC ATTCTCTACGCnGGAATCAACGCTCTGGCGATTTTGTTCGTGGTGGCGCTGGTGCCCGAA ACGAAGGGGAAGACCCTGGAACAGATCCAAGCAGCCATGAATAAATAGAACTGAAGCAAG AACTGAAGAGCATTCTTTTTAGAAGTTAAATCCTCATTGAAAATTTTGGCAGCTCAATTC AGAAAG
3' Flanking Sequence	TGGAAAATCTTTGAAGATGCTTCAAATTAAAACCACAAAATTATTGTACTGCTATTTTTA CGATGATTAATTAAGTTTTTATTTATTGACTTAAAAAAACCGAAGACTGCAAGACACACA GGGAGTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 847

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	188.12	JPsnpHou00502	View

Sequence

>JPsnpHou00502 ID=JPsnpHou00502; Name=JPsnpHou00502; organism=Pyrus pyrifolia; type=genetic_marker; length=975bp
TTCTTGGTCTCTTTTTCATTCCTGAGTCTCCAAGATGGTTGGCAAAGACA
GGACGCCATCAAGATTTTGAAGATGCGCTACAGAAACTGCGCGGCAAAGA
TGCTGACATATCTGAGGAAGCAGAAGAAATCCAGGATTATATTGCAACTC
TTGACTTGCTTCCTAAAGCCAAATTTCTGGATTTGTTTCAAAGGAGATAC
TGGAGCTCACTCATTATCGGAGTTGGGCTGATGTTCTGTCAGCAACTGGG
AGGAATCAACGGGGTCTGTTTCTATGTGAGCGATATTTTTGAACAAGCAG
GTTATAGTTACCGGCATTGCTGCAGGCGTGATGGATAAAGCTGGACGCAA
GCCTCTAATTTTGGTCTCTGCAACCGGGTTGGTGCTTGGCTGTCTCTTGA
CAGCAGTTTCATTCTTTCTGAAGGTTCATGAATTGGCACTCGACGCAGTT
CCCATACTTGCTGTAACCGGCATACTGCTCTACATAGGAGCCTTTTCGAT
AGGAATGGGAGCAGTTCCTTGGGTTGTGATGTCCGAGATATTCCCGATAA
ACATTAAAGGGCAGGCCGGAAGCTTAGCAACGCTGGTGAATTGGCTCTGC
GCATGGTTGTGTTCCTACACTTTCAACTATCTTATGAGTTGGAGCTCCTA
CGGTACCTTCATTCTCTACGCnGGAATCAACGCTCTGGCGATTTTGTTCG
TGGTGGCGCTGGTGCCCGAAACGAAGGGGAAGACCCTGGAACAGATCCAA
GCAGCCATGAATAAATAGAACTGAAGCAAGAACTGAAGAGCATTCTTTTT
AGAAGTTAAATCCTCATTGAAAATTTTGGCAGCTCAATTCAGAAAGwTGG
AAAATCTTTGAAGATGCTTCAAATTAAAACCACAAAATTATTGTACTGCT
ATTTTTACGATGATTAATTAAGTTTTTATTTATTGACTTAAAAAAACCGA
AGACTGCAAGACACACAGGGAGTAG