JPsnpHou00566, JPsnpHou00566 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00566
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CCTATCTCAAGAAGGTTGGCTACAACCTAGACAAGATTCCCTTTGTCCCCATTTCTGGGT TCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGTCCCACCC TTCTTGAGGCTCTTGACCAGATCCACGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGGC TTCCACTTCAGGATGTGTACAAGATTGGTGGTATCGGTACCGTCCCCGTTGGACGTGTTG AGACTGGTATCATTAAGCCTGGTATGGTGGTGACTTTTGGCCCAACTGGTCTGACTACTG AGGTCAAGTCTGTTGAGATGCACCATGAAGCTATGCAGGAGGCCCTTCCAGGTGATAATG TTGGATTCAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGGTATGTTGCTTCCA ACTCCAAGGATGATCCCGCAAAGGAGGCTGCCAACTTTACCGCTCAGGTCATCATTATGA ACCACCCCGGCCAGATTGGACAGGGATATGCTCCAGTTCTCGACTGTCACACCTCCCACA TTGCTGTCAAGTTTGCTGAGCTCGTTACAAAGATCGACAGGCGATCTGGCAAGGAGCTTG AGAGGGAGCCCAAGTTTTTGAAGAATGGTGATGCTGGATTTGTGAAGATGATTCCCACCA AACCCATGGTTGTTGAGACCTTCTCTGAGTATCCACCGCTCGGACGTTTTGCTGTGAGGG ACATGCGCCAGACTGTTGCAGTTGGTGTCATCAAGAGCGTTGAGAAGAAGGATCCAACTG GAGCTAAGATCACCAAGGCCGCAGCTAAGAAGAAGTGAACCGCACTGGTTCAACAGATTT CCGCA
3' Flanking Sequence	GCGAAATCTTCTATCATCTTAATAATAATATTAGCCGTAAAAACTTCTCTATTAGTATTT CTATGGATTGCTGGTTGCGTAATTTGGTGTCGGTGTCGTCGTTAGGTATGCATTATCAGA ACTGGGTGCTTGACCGGCGGTGGCGCTGCTAGTGTTTTCCTTTATGGCCTCTGTTGAGAG TCAAGGTGCTCTGGGTTCTTCCCGGAGCGGCTAAAAGCTTTTGCGACTTGGTTCTTGCTA CTCTCGCTATAAAAACATAGTTTACTAATTAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 846

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	73.47	JPsnpHou00566	View

Sequence

>JPsnpHou00566 ID=JPsnpHou00566; Name=JPsnpHou00566; organism=Pyrus pyrifolia; type=genetic_marker; length=1128bp
CCTATCTCAAGAAGGTTGGCTACAACCTAGACAAGATTCCCTTTGTCCCC
ATTTCTGGGTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGA
CTGGTACAAGGGTCCCACCCTTCTTGAGGCTCTTGACCAGATCCACGAGC
CCAAGAGGCCCTCAGACAAGCCCCTCCGGCTTCCACTTCAGGATGTGTAC
AAGATTGGTGGTATCGGTACCGTCCCCGTTGGACGTGTTGAGACTGGTAT
CATTAAGCCTGGTATGGTGGTGACTTTTGGCCCAACTGGTCTGACTACTG
AGGTCAAGTCTGTTGAGATGCACCATGAAGCTATGCAGGAGGCCCTTCCA
GGTGATAATGTTGGATTCAATGTTAAGAATGTTGCTGTCAAGGATCTCAA
GCGTGGGTATGTTGCTTCCAACTCCAAGGATGATCCCGCAAAGGAGGCTG
CCAACTTTACCGCTCAGGTCATCATTATGAACCACCCCGGCCAGATTGGA
CAGGGATATGCTCCAGTTCTCGACTGTCACACCTCCCACATTGCTGTCAA
GTTTGCTGAGCTCGTTACAAAGATCGACAGGCGATCTGGCAAGGAGCTTG
AGAGGGAGCCCAAGTTTTTGAAGAATGGTGATGCTGGATTTGTGAAGATG
ATTCCCACCAAACCCATGGTTGTTGAGACCTTCTCTGAGTATCCACCGCT
CGGACGTTTTGCTGTGAGGGACATGCGCCAGACTGTTGCAGTTGGTGTCA
TCAAGAGCGTTGAGAAGAAGGATCCAACTGGAGCTAAGATCACCAAGGCC
GCAGCTAAGAAGAAGTGAACCGCACTGGTTCAACAGATTTCCGCAkGCGA
AATCTTCTATCATCTTAATAATAATATTAGCCGTAAAAACTTCTCTATTA
GTATTTCTATGGATTGCTGGTTGCGTAATTTGGTGTCGGTGTCGTCGTTA
GGTATGCATTATCAGAACTGGGTGCTTGACCGGCGGTGGCGCTGCTAGTG
TTTTCCTTTATGGCCTCTGTTGAGAGTCAAGGTGCTCTGGGTTCTTCCCG
GAGCGGCTAAAAGCTTTTGCGACTTGGTTCTTGCTACTCTCGCTATAAAA
ACATAGTTTACTAATTAAAAAAAAAAAA