JPsnpHou00415, JPsnpHou00415 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00415
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GTGAAATGGTGCAAAAACATCAAGATTGCAGATCCTCTTGAAGAAGGTTGCAGGCTTGGC CCTGTTGTTAGTGGAGGGCAATATGAGAAAATATTGAAGTCCATCGAAACAGCTAAGAGT GAAGGCGCAAGAGTTTTGAGTGGTGGGGCTCGTCCTGAGCATCTAACGAAAGGATTCTTC ATTGAACCAACAATCATAACTGATGTAACAACCTCCATGCAAATCTGGAGAGAAGAAGTT TTCGGCCCTGTTCTTTGTGTCAAAACATTTAGTTCAGAAGACGAAGCTCTTGAACTAGCA AATGACACCCATTATGGCTTAGGCGCTGCAGTCATATCAAAAGATTTAGAAAGGTGTGAC CGTTTCTCTAAGGGCCTTCAAGCAGGAATTGTATGGATCAACTGCTCACAACCATGCTTC TGTCAGGCTCCATGGGGAGGCAACAAACGAAGTGGTTTTGGGCGTGAACTAGGGAAATGG GGACTTGATAATTACTTGACCGTGAAGCAGGTTACTGAATATGTATCTGATGATCCATGG GGTTGGTACGCGTCGCCTTCAAAGCTGTGAAAGTTGACCCGCGAAATAGCATGGTGAAAA CTGCAGATGTACTAAAAACTGGAAAACTGGATGTCAATTTTAAACATTTGGCTAGGCATA ATATACGTTTAACCATCAAGCTTTAGCTTTCTTTTACTGCAGACTCACATGTCTTGAATT CAGAGCTTACTCATGTATAAAATCTTGGATGCAACCATTTATATATCCTCTTGTGTGCAC GTGATGAGTTAGGCAC
3' Flanking Sequence	AGAGGATATGCACTCGGTTGCACTTACGTGTTTTTCTGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 797

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	140.35	JPsnpHou00415	View

Sequence

>JPsnpHou00415 ID=JPsnpHou00415; Name=JPsnpHou00415; organism=Pyrus pyrifolia; type=genetic_marker; length=836bp
GTGAAATGGTGCAAAAACATCAAGATTGCAGATCCTCTTGAAGAAGGTTG
CAGGCTTGGCCCTGTTGTTAGTGGAGGGCAATATGAGAAAATATTGAAGT
CCATCGAAACAGCTAAGAGTGAAGGCGCAAGAGTTTTGAGTGGTGGGGCT
CGTCCTGAGCATCTAACGAAAGGATTCTTCATTGAACCAACAATCATAAC
TGATGTAACAACCTCCATGCAAATCTGGAGAGAAGAAGTTTTCGGCCCTG
TTCTTTGTGTCAAAACATTTAGTTCAGAAGACGAAGCTCTTGAACTAGCA
AATGACACCCATTATGGCTTAGGCGCTGCAGTCATATCAAAAGATTTAGA
AAGGTGTGACCGTTTCTCTAAGGGCCTTCAAGCAGGAATTGTATGGATCA
ACTGCTCACAACCATGCTTCTGTCAGGCTCCATGGGGAGGCAACAAACGA
AGTGGTTTTGGGCGTGAACTAGGGAAATGGGGACTTGATAATTACTTGAC
CGTGAAGCAGGTTACTGAATATGTATCTGATGATCCATGGGGTTGGTACG
CGTCGCCTTCAAAGCTGTGAAAGTTGACCCGCGAAATAGCATGGTGAAAA
CTGCAGATGTACTAAAAACTGGAAAACTGGATGTCAATTTTAAACATTTG
GCTAGGCATAATATACGTTTAACCATCAAGCTTTAGCTTTCTTTTACTGC
AGACTCACATGTCTTGAATTCAGAGCTTACTCATGTATAAAATCTTGGAT
GCAACCATTTATATATCCTCTTGTGTGCACGTGATGAGTTAGGCACmAGA
GGATATGCACTCGGTTGCACTTACGTGTTTTTCTGA