JPsnpHou00368, JPsnpHou00368 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00368
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CGCCGCCGTACGCCAAGACACCGCCCTCTGGACCCCTGCCCCGCTCTCCGAGATAGAACC GGCCGCGGAGTCTCTCTTCCACGTCCGCGTCGACCTATCCGACGCCCCCGACCTCGCCTC GTCCCACACGCGAGCCGGCCAGTACCTCCAGCTTCGCGTCCCGGACGAGTCGAAGCCCTC ATTTCTGGCCATCGCCTCGCCACCATCGTTGGCGTCCACAAAAGGGGTGTTTGAGTTTTT GGTGAAGAGCGTGGCCGGGTCTACGGCGGAGCTTCTGTGCGGGCTCAAGAGAGGGGCCGT GGTGGAGCTCAGCCAGGTCATGGGAAAAGGCTTCGACATTGAACGGATCGAACCGCCGGA AAATTACCCTACGGTTCTAATTTTCGCCACGGGATCTGGAATCAGTCCAATCCGGTCTCT GATCGAATCGGGGTTTAGCGCCGATAAGAGATCCGCCGTGAAGCTATTTTACGGCGCTAG AAACCTTGACAGAATGGCGTATCAGGATAGATTTAAGGACTGGGAATCTTCAGGTGTTGA GATTGTGCCAGTATTATCACAACCGCACGGCGGTTGGACGGGACAAAGCGGTTATGTGCA GGCTGCCTTTTCCAGAGCCAAGCAAATTGATAACCCTCTCTCTACAGCTGCTGTTTTATG TGGGCAGAAGCCGATGACTGAGGAGGTTACCTCAATTCTTGTAGCAGATGGTGTATCAAC TGAAAACATACTGAAGAATTTCTGACTAATCCATCAAAATTACATTGTTGTATCTTTACT GAGTGAACAGTATT
3' Flanking Sequence	ATTTGTTCCCCACTGCTGAGGATAAATTGTCCCAGCTTGGAAAAACGATAATAAAAACAA TTTTGGGAGATCCTGACATATAAGCATGTTTGTAATTTGTATTTTCAAATTGGTAATTAT CTCAGCAGTTAAATTGTAAAATCGACTCTTAAGTACATTATTTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 795

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	21.47	JPsnpHou00368	View

Sequence

>JPsnpHou00368 ID=JPsnpHou00368; Name=JPsnpHou00368; organism=Pyrus pyrifolia; type=genetic_marker; length=960bp
CGCCGCCGTACGCCAAGACACCGCCCTCTGGACCCCTGCCCCGCTCTCCG
AGATAGAACCGGCCGCGGAGTCTCTCTTCCACGTCCGCGTCGACCTATCC
GACGCCCCCGACCTCGCCTCGTCCCACACGCGAGCCGGCCAGTACCTCCA
GCTTCGCGTCCCGGACGAGTCGAAGCCCTCATTTCTGGCCATCGCCTCGC
CACCATCGTTGGCGTCCACAAAAGGGGTGTTTGAGTTTTTGGTGAAGAGC
GTGGCCGGGTCTACGGCGGAGCTTCTGTGCGGGCTCAAGAGAGGGGCCGT
GGTGGAGCTCAGCCAGGTCATGGGAAAAGGCTTCGACATTGAACGGATCG
AACCGCCGGAAAATTACCCTACGGTTCTAATTTTCGCCACGGGATCTGGA
ATCAGTCCAATCCGGTCTCTGATCGAATCGGGGTTTAGCGCCGATAAGAG
ATCCGCCGTGAAGCTATTTTACGGCGCTAGAAACCTTGACAGAATGGCGT
ATCAGGATAGATTTAAGGACTGGGAATCTTCAGGTGTTGAGATTGTGCCA
GTATTATCACAACCGCACGGCGGTTGGACGGGACAAAGCGGTTATGTGCA
GGCTGCCTTTTCCAGAGCCAAGCAAATTGATAACCCTCTCTCTACAGCTG
CTGTTTTATGTGGGCAGAAGCCGATGACTGAGGAGGTTACCTCAATTCTT
GTAGCAGATGGTGTATCAACTGAAAACATACTGAAGAATTTCTGACTAAT
CCATCAAAATTACATTGTTGTATCTTTACTGAGTGAACAGTATTkATTTG
TTCCCCACTGCTGAGGATAAATTGTCCCAGCTTGGAAAAACGATAATAAA
AACAATTTTGGGAGATCCTGACATATAAGCATGTTTGTAATTTGTATTTT
CAAATTGGTAATTATCTCAGCAGTTAAATTGTAAAATCGACTCTTAAGTA
CATTATTTTT