JPsnpHou00627, JPsnpHou00627 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00627
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TAGCAACCCTGTGAACTCCACAGTTCCCATTGCTGCTGAAGTTTTCAAAAAAGCTGGTAC CTTGATCCTAAGAAACTATTGGGAGTCACCATGCTTGATGTTGTTAGAGCCAATACTTTT GTGGGAGAGGTTCTGGGTCTTGATCCTAGGGACATCGACGTTCCCGTTGTTGGGGGTCAT GCAGGGGTTACAATTTTGCCTCTTCTGTCTCAGGTTAAACCTCCATGCTCTTTCACCCCA AAAGAAGTTGATTACCTAACAGATCGCATTCAGAATGGTGGCACTGAGGTGGTTGAGGCA AAAGCTGGAGCTGGTTCTGCAACATTATCAATGGCATATGCTGCTGTnAAATTTGCAGAT GCATGCCTTCGTGGCTTGCGAGGAGATGCTGGGGTTGTCGAATGTGCATTTTTGGCTTCT CAGGTGACTGAACTTCCCTTCTTTGCATCCAAGGTGCGGCTTGGCCGTACTGGAGCTGAG GAAATATATCCTCTTGGCCCCCTGAATGAGTATGAGAGGGCTGGCTTGGAGAAGGCAAAG AAAGAACTAGCAGCAAGCATTCAGAAGGGGGTTTCTTTCGCCAGAAAATGAACAGGTTGT GTTTACTACTTTACGTTGGAGATGAAGCCGTTTTAGAATTTAGATGGTCCCTTGATACCC TTTCTCAACATCACATTGATAGAAAATAAACGGTAGGTAATCGATCTATCAAATGCAAAC TAAGACGCTCTCTACAACTCCTTGATTTAGAGCATCACATATAGGTTTCTAAGTTGTGTC ATAGAGCTTGT
3' Flanking Sequence	TGGTACTCGAACATGTTCCTCAAAAATAAAACnnTGTGTTGAGGCAGCGATTGATTTTCT TTTAATTCATTTATATCCACCCAAGATCAAAGTGAAATGAAATGTTTGTTGCAACGAAGC GAAAAGGAAAAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 792

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	89.07	JPsnpHou00627	View

Sequence

>JPsnpHou00627 ID=JPsnpHou00627; Name=JPsnpHou00627; organism=Pyrus pyrifolia; type=genetic_marker; length=934bp
TAGCAACCCTGTGAACTCCACAGTTCCCATTGCTGCTGAAGTTTTCAAAA
AAGCTGGTACCTTGATCCTAAGAAACTATTGGGAGTCACCATGCTTGATG
TTGTTAGAGCCAATACTTTTGTGGGAGAGGTTCTGGGTCTTGATCCTAGG
GACATCGACGTTCCCGTTGTTGGGGGTCATGCAGGGGTTACAATTTTGCC
TCTTCTGTCTCAGGTTAAACCTCCATGCTCTTTCACCCCAAAAGAAGTTG
ATTACCTAACAGATCGCATTCAGAATGGTGGCACTGAGGTGGTTGAGGCA
AAAGCTGGAGCTGGTTCTGCAACATTATCAATGGCATATGCTGCTGTnAA
ATTTGCAGATGCATGCCTTCGTGGCTTGCGAGGAGATGCTGGGGTTGTCG
AATGTGCATTTTTGGCTTCTCAGGTGACTGAACTTCCCTTCTTTGCATCC
AAGGTGCGGCTTGGCCGTACTGGAGCTGAGGAAATATATCCTCTTGGCCC
CCTGAATGAGTATGAGAGGGCTGGCTTGGAGAAGGCAAAGAAAGAACTAG
CAGCAAGCATTCAGAAGGGGGTTTCTTTCGCCAGAAAATGAACAGGTTGT
GTTTACTACTTTACGTTGGAGATGAAGCCGTTTTAGAATTTAGATGGTCC
CTTGATACCCTTTCTCAACATCACATTGATAGAAAATAAACGGTAGGTAA
TCGATCTATCAAATGCAAACTAAGACGCTCTCTACAACTCCTTGATTTAG
AGCATCACATATAGGTTTCTAAGTTGTGTCATAGAGCTTGTrTGGTACTC
GAACATGTTCCTCAAAAATAAAACnnTGTGTTGAGGCAGCGATTGATTTT
CTTTTAATTCATTTATATCCACCCAAGATCAAAGTGAAATGAAATGTTTG
TTGCAACGAAGCGAAAAGGAAAAAAAAAAAAAAA