JPsnpHou00349, JPsnpHou00349 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00349
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CAAGAACTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATCGTTGACATAAGAGAG GAGATTATGCGCAAGAGAAGAGCCGGAAAACTTCCTGGCGACACAACCTCTGTCCTAAAA GCTTGGTGGCAGTCACATTCAAAGTGGCCATATCCAACTGAGGAGGACAAGGCTAGGTTG GTACAGGAAACTGGTTTGCAATTAAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAG AGGAACTGGCACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAGCGCAAAAGTAAT GCAGGTGAAAACAGCAGTGACGACCGGTTCATATAAAATGGGTAAAGGGAAATGGAGAGC CAGTCTGGTTTTGGTGATATTCATTCACTCGCTTCCACTACATTTACAACTCCAACGTAG AAATTGCGATAGCATAGGACTTCATGGAAGAAGACTACAGGACTCAGGTAAAAGAGTCAT ATTTTGGTTCTACTAAAGGAAAGAAGGCTAACTCTGATTGTGAAGGTGCGATTATAAACC CAATATGAGCCGTTATAGTACAGGTATGCTCAAAGGATGCAGATGATGAACGCGTATGTA ATATGAATATATCAATAGGAATTCATGAGTGTTTAGGAATTGTGTTACTGAAACTGCAAA TTGGATGGTCCACCGCGGGCTTACAATTTTTTGTTTGTAATCTTCAGTTTTGTGAATAAG AATAGTGAGAGTTGTGGGGGTGTACAAACCTGAGCTTTTGGTTCCTTACATCACACTCAT G
3' Flanking Sequence	TTTTAGCTTTTTTCGACATTTGTTGTTGAGATAATAAATTTGTTAGTAATGGTATGTAAA ATTTTAAGTCGCATCTTTGGGGCTCATTTGTGATTTATAAACGAAGCTGTTCAATCCCTA CCAAAAAAAAAAAAAAAAACTAAGNGACTAGCCAACGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 782

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	47.35	JPsnpHou00349	View

Sequence

>JPsnpHou00349 ID=JPsnpHou00349; Name=JPsnpHou00349; organism=Pyrus pyrifolia; type=genetic_marker; length=940bp
CAAGAACTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATCGTTGA
CATAAGAGAGGAGATTATGCGCAAGAGAAGAGCCGGAAAACTTCCTGGCG
ACACAACCTCTGTCCTAAAAGCTTGGTGGCAGTCACATTCAAAGTGGCCA
TATCCAACTGAGGAGGACAAGGCTAGGTTGGTACAGGAAACTGGTTTGCA
ATTAAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAGAGGAACTGGC
ACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAGCGCAAAAGTAAT
GCAGGTGAAAACAGCAGTGACGACCGGTTCATATAAAATGGGTAAAGGGA
AATGGAGAGCCAGTCTGGTTTTGGTGATATTCATTCACTCGCTTCCACTA
CATTTACAACTCCAACGTAGAAATTGCGATAGCATAGGACTTCATGGAAG
AAGACTACAGGACTCAGGTAAAAGAGTCATATTTTGGTTCTACTAAAGGA
AAGAAGGCTAACTCTGATTGTGAAGGTGCGATTATAAACCCAATATGAGC
CGTTATAGTACAGGTATGCTCAAAGGATGCAGATGATGAACGCGTATGTA
ATATGAATATATCAATAGGAATTCATGAGTGTTTAGGAATTGTGTTACTG
AAACTGCAAATTGGATGGTCCACCGCGGGCTTACAATTTTTTGTTTGTAA
TCTTCAGTTTTGTGAATAAGAATAGTGAGAGTTGTGGGGGTGTACAAACC
TGAGCTTTTGGTTCCTTACATCACACTCATGrTTTTAGCTTTTTTCGACA
TTTGTTGTTGAGATAATAAATTTGTTAGTAATGGTATGTAAAATTTTAAG
TCGCATCTTTGGGGCTCATTTGTGATTTATAAACGAAGCTGTTCAATCCC
TACCAAAAAAAAAAAAAAAAACTAAGNGACTAGCCAACGG