JPsnpHou00406, JPsnpHou00406 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00406
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GCCTGTGCTTGTGGATGGGGACACCGTTGTTGCTGACTCATTTGCCATCCTACTGTATTT AGAAGAAAAGTACCCGCAGCATCCATTGTTACCACCAGATCTTCAGAAAAAGGCTATCAA TTACCAGGCTGCAAATATTGTTTCCTCAAGCATACAACCTCTACAGAATCTGACTGTACT GAAGTACATTGAAGAAAAAGTTAGGCCCGTTGAGAAACTTGAATGGGTTCAATTTCATAT TGGAAAAGGCTTTTTAGCACTTGAAGAACTGCTGAACAACCATGCAGGAAAATATGCAAC TGGAGATGAAGTTTACATGGCAGATTTGTTTCTGGCACCGCAGCTTTGTGCAGCCATTAC AAGGTTCCAGCTAGACATGACTCAGTTTCCCCTTTTGGCCAGGTTGCATGAGGCATACAA TAAGATACCAGCATTCCTAGATGCTTTACCAGAAAAGCAGCCGGATGCTCCTTCTTCATA GTTAAACAATTGGGTTGAAGAGATGAAGCGTATCCATCCCAAAGTGCAAAATAAAGGGTC AACAATTATGGTCTGAGCTGAAGCATTTGAAATGTTGTAAAGCACTCAGGTGTTGGTCCG TCCAAATAAGGGTTATCCCATGATGGAATAATGATGAATCTGTAGAATGTTGTGGTTGAA TTGTTGAGTGATGTAATGGTTTGGAATGCCTGTCAAAATAGTCATTTGAAGTACACATCC TGTGTACTTGGAGGATACAGCTTCCTGTATTGTTGATGCA
3' Flanking Sequence	TGACTTATCAGTTGCCTAGCAATCGGGTTTATTACACACACACACACACACACATGTTGG CTATATGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 761

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	167.96	JPsnpHou00406	View

Sequence

>JPsnpHou00406 ID=JPsnpHou00406; Name=JPsnpHou00406; organism=Pyrus pyrifolia; type=genetic_marker; length=829bp
GCCTGTGCTTGTGGATGGGGACACCGTTGTTGCTGACTCATTTGCCATCC
TACTGTATTTAGAAGAAAAGTACCCGCAGCATCCATTGTTACCACCAGAT
CTTCAGAAAAAGGCTATCAATTACCAGGCTGCAAATATTGTTTCCTCAAG
CATACAACCTCTACAGAATCTGACTGTACTGAAGTACATTGAAGAAAAAG
TTAGGCCCGTTGAGAAACTTGAATGGGTTCAATTTCATATTGGAAAAGGC
TTTTTAGCACTTGAAGAACTGCTGAACAACCATGCAGGAAAATATGCAAC
TGGAGATGAAGTTTACATGGCAGATTTGTTTCTGGCACCGCAGCTTTGTG
CAGCCATTACAAGGTTCCAGCTAGACATGACTCAGTTTCCCCTTTTGGCC
AGGTTGCATGAGGCATACAATAAGATACCAGCATTCCTAGATGCTTTACC
AGAAAAGCAGCCGGATGCTCCTTCTTCATAGTTAAACAATTGGGTTGAAG
AGATGAAGCGTATCCATCCCAAAGTGCAAAATAAAGGGTCAACAATTATG
GTCTGAGCTGAAGCATTTGAAATGTTGTAAAGCACTCAGGTGTTGGTCCG
TCCAAATAAGGGTTATCCCATGATGGAATAATGATGAATCTGTAGAATGT
TGTGGTTGAATTGTTGAGTGATGTAATGGTTTGGAATGCCTGTCAAAATA
GTCATTTGAAGTACACATCCTGTGTACTTGGAGGATACAGCTTCCTGTAT
TGTTGATGCAwTGACTTATCAGTTGCCTAGCAATCGGGTTTATTACACAC
ACACACACACACACATGTTGGCTATATGA