JPsnpHou00117, JPsnpHou00117 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00117
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CATGAGCATACAAGTGGTGGACGGGGTTCTGGTTTCATCCCGATTGCAGAATATGGAAGC GAGTTTACTAAAAGGTTCTAGAAACAAAAAGCCCAGAAAGGTTGTGAGACTCCTATACAG TGGCAGGAACCATTATGATCTGCTTGTATGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAG GGAGAAAGAGATGGGAGTGACAAAGGAGCAAGTGAAGTCTTCACTGACGTCAAAACTGAA CCCTGCACATCTCGAAGTAATTGATACATCTGGAGGATGTGGTGCTAGCTTTGCTATTGA GATAGTATCAGCGCAATTTGAAGGAAAGAGGTTGCTGGAGAGGCATCGGCTGGTAAATTC TTCTTTGGAAGAGGAGATGAAGGAGATTCATGCGCTCTCGATAAAGAAAGCT
3' Flanking Sequence	TGACACCAGAGCAGTGGAAACAACAGCAGGAGTCTCAAGTATCTAAACCTGCTGAATGAA CACAATTTCGAAAGGTTTCAAGTTTATTCTGTAGCTCATAACAATATATTTCGAGTTTGC TGGAGAATTAGACGAAATGTTTnAGTGTGAGAATATGGTGATAATATTATGATAATTATT GTAACAGTTTGTATAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 413

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	41.08	JPsnpHou00117	View

Sequence

>JPsnpHou00117 ID=JPsnpHou00117; Name=JPsnpHou00117; organism=Pyrus pyrifolia; type=genetic_marker; length=609bp
CATGAGCATACAAGTGGTGGACGGGGTTCTGGTTTCATCCCGATTGCAGA
ATATGGAAGCGAGTTTACTAAAAGGTTCTAGAAACAAAAAGCCCAGAAAG
GTTGTGAGACTCCTATACAGTGGCAGGAACCATTATGATCTGCTTGTATG
AGAGAGAGAGAGAGAGAGAGCGAGAGAGAGGGAGAAAGAGATGGGAGTGA
CAAAGGAGCAAGTGAAGTCTTCACTGACGTCAAAACTGAACCCTGCACAT
CTCGAAGTAATTGATACATCTGGAGGATGTGGTGCTAGCTTTGCTATTGA
GATAGTATCAGCGCAATTTGAAGGAAAGAGGTTGCTGGAGAGGCATCGGC
TGGTAAATTCTTCTTTGGAAGAGGAGATGAAGGAGATTCATGCGCTCTCG
ATAAAGAAAGCTyTGACACCAGAGCAGTGGAAACAACAGCAGGAGTCTCA
AGTATCTAAACCTGCTGAATGAACACAATTTCGAAAGGTTTCAAGTTTAT
TCTGTAGCTCATAACAATATATTTCGAGTTTGCTGGAGAATTAGACGAAA
TGTTTnAGTGTGAGAATATGGTGATAATATTATGATAATTATTGTAACAG
TTTGTATAA